View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_235 (Length: 246)
Name: NF1498_high_235
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_235 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 24830979 - 24831192
Alignment:
| Q |
17 |
atgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatatagatccatggaatgaagctgagcct |
116 |
Q |
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| T |
24830979 |
atgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatatagatccatggaatgaagctgagcct |
24831078 |
T |
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| Q |
117 |
taccctttctactagcgaatcggaacaaccattgaatgagagacaattttttcccccacagctgtatctgtatcatatgacatttgattttttcattgtc |
216 |
Q |
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| T |
24831079 |
taccctttctactagcgaatcggaacaaccattgaatgagagacaatttttttccccacagctgtatctgtatcatatgacatttgattttttcattgtc |
24831178 |
T |
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| Q |
217 |
atgtccattggaag |
230 |
Q |
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| T |
24831179 |
atgtccattggaag |
24831192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 814968 - 815036
Alignment:
| Q |
92 |
agatccatggaatgaagctgagccttaccctttctactagcgaatcggaacaaccattgaatgagagac |
160 |
Q |
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||||||||| ||||||| ||||||||||| |||||||||||||||| | |||||||||||||| ||||| |
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| T |
814968 |
agatccatgaaatgaaggtgagccttaccgtttctactagcgaatctgcacaaccattgaatgggagac |
815036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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