View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_239 (Length: 244)
Name: NF1498_high_239
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_239 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 7822111 - 7822347
Alignment:
| Q |
7 |
aatatattcttcaatacttcagggatgctccatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaattcaat |
106 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7822111 |
aatatattcttcaatccttcatggatgcttcatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaattcaat |
7822210 |
T |
|
| Q |
107 |
taaattgatctttgtgataccgattataactactttatcttatcggtttatttgtctattgcaaaaactactagattgaagagaaatacttaaattgtct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7822211 |
taaattgatctttgtgataccgattataactactttatcttatcagtttatttgtctatagcaaaaactactagattgaagataaatacttaaattgtct |
7822310 |
T |
|
| Q |
207 |
agattgaaatggattaataaatttttcaacaaaaatta |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7822311 |
agattgaaatggattaataaa-ttttcaacaaaaatta |
7822347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 18641664 - 18641868
Alignment:
| Q |
12 |
attcttcaatacttcagggatgctccatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaattcaattaaat |
111 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| |||||||||||| || |||||||| |||||| ||||||||| | |||||||||||||| |
|
|
| T |
18641664 |
attcttcaatccttcaaggatgctccatattaaattattctaaaatttatcaagaatgacaaatatactaatgggttcactaaactaaattcaattaaat |
18641763 |
T |
|
| Q |
112 |
tgatctttgtgataccgattataactactttatcttatcggtttatttgtctattgcaaaaactactagattgaagagaaatacttaaattgtctagatt |
211 |
Q |
| |
|
||||| ||||| || |||||||||||| ||||||||||| | ||||| ||||| |||||| |||||||||||| ||||||||||||| | ||||| ||| |
|
|
| T |
18641764 |
tgatc-ttgtggtaacgattataactattttatcttatcagattattcatctatagcaaaagctactagattgacgagaaatacttaactggtctaaatt |
18641862 |
T |
|
| Q |
212 |
gaaatg |
217 |
Q |
| |
|
|||||| |
|
|
| T |
18641863 |
gaaatg |
18641868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University