View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_243 (Length: 242)
Name: NF1498_high_243
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_243 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 52972495 - 52972278
Alignment:
| Q |
6 |
tcaaacatgaaattgacacacttaaacctctctatcaaaacctgcttagacaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaaca |
105 |
Q |
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||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972495 |
tcaaacatggaattgaaacacttaaacctctctctcaaaacctgcttagagaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaaca |
52972396 |
T |
|
| Q |
106 |
ccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctgcaccagttatcacccatggactcatgaagatcaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52972395 |
ccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctacaccagttatcacccatggactcatgaagatcaac |
52972296 |
T |
|
| Q |
206 |
acaccctttaatcttttg |
223 |
Q |
| |
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|||||||||||||||||| |
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| T |
52972295 |
acaccctttaatcttttg |
52972278 |
T |
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