View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_245 (Length: 240)

Name: NF1498_high_245
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_245
NF1498_high_245
[»] chr1 (4 HSPs)
chr1 (54-229)||(10014350-10014525)
chr1 (54-229)||(20421148-20421324)
chr1 (4-59)||(10014231-10014286)
chr1 (9-59)||(20421022-20421072)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 10014350 - 10014525
Alignment:
Q  54 tggtttagacattctaaagtgcttctaacctactattttgatttgatgatatgcattcgtgcatcttatgtctatcatgaagtttctttttatttaagaa 153  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10014350 tggtttagacattctaaagtgcttctaacctactatttcgatttgatgatatgcattagtgcatcttatgtctatcatgaagttcctttttatttaagaa 10014449  T
Q  154 ttgagttcctaagattgacatggatcaatggtcatcttgttctttaatatattagttctcatgagatgtttttgat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10014450 ttgagttcctaagattgacatggatcaatggtcatcttgttctttaatatattagttctcatgagatgtttttgat 10014525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 20421148 - 20421324
Alignment:
Q  54 tggtttagacattctaaagtgcttctaacctactattttgatttgatgatatgcattcgtgcatcttatgtctatcatgaagtttctttttatttaagaa 153  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||| |||||||||||| ||||| |||||||||    
T  20421148 tggtttagacattctaaagtgcttctaacctacaattttgatttgatgacatgcatttgtgcttcttatgtatatcatgaagttccttttaatttaagaa 20421247  T
Q  154 ttgagttcctaagattgacatggatcaatggtc-atcttgttctttaatatattagttctcatgagatgtttttgat 229  Q
    ||| |||||| |||||||||||||||| ||||| |||||||||| |||||| |||||||| ||||||||||||||||    
T  20421248 ttgtgttccttagattgacatggatcattggtcaatcttgttctataatattttagttcttatgagatgtttttgat 20421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 10014231 - 10014286
Alignment:
Q  4 attcattgacttgaaattctaatacacctgatctacgacctcaagtacagtggttt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10014231 attcattgacttgaaattctaatacacctgatctacgacctcaagtacagttgttt 10014286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 20421022 - 20421072
Alignment:
Q  9 ttgacttgaaattctaatacacctgatctacgacctcaagtacagtggttt 59  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  20421022 ttgacttgaaattctgatacacctgatctacgacctcaaatacagttgttt 20421072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University