View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_246 (Length: 240)

Name: NF1498_high_246
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_246
NF1498_high_246
[»] chr8 (7 HSPs)
chr8 (9-114)||(10406115-10406221)
chr8 (35-107)||(22912873-22912945)
chr8 (165-232)||(32898424-32898491)
chr8 (165-232)||(35177472-35177539)
chr8 (165-207)||(35178808-35178850)
chr8 (39-107)||(2116268-2116336)
chr8 (175-232)||(10407563-10407620)
[»] chr3 (6 HSPs)
chr3 (9-114)||(24696220-24696326)
chr3 (165-207)||(17700595-17700637)
chr3 (165-207)||(17701923-17701965)
chr3 (37-107)||(52099518-52099588)
chr3 (168-207)||(36280321-36280360)
chr3 (37-107)||(52796517-52796587)
[»] scaffold0072 (1 HSPs)
scaffold0072 (37-107)||(46826-46896)
[»] chr6 (3 HSPs)
chr6 (37-107)||(5045727-5045797)
chr6 (37-107)||(252074-252144)
chr6 (167-203)||(31219034-31219070)
[»] chr1 (5 HSPs)
chr1 (37-107)||(10615990-10616060)
chr1 (173-232)||(9339731-9339790)
chr1 (173-232)||(32665749-32665808)
chr1 (173-232)||(52439560-52439619)
chr1 (175-207)||(7945558-7945590)
[»] chr2 (11 HSPs)
chr2 (168-232)||(7073719-7073783)
chr2 (174-230)||(40000315-40000371)
chr2 (165-207)||(32765015-32765057)
chr2 (38-107)||(27869243-27869312)
chr2 (173-207)||(14704091-14704125)
chr2 (165-207)||(31091531-31091573)
chr2 (165-207)||(32766243-32766285)
chr2 (165-207)||(34582674-34582716)
chr2 (37-107)||(37472506-37472576)
chr2 (65-105)||(9272519-9272559)
chr2 (175-207)||(37607189-37607221)
[»] chr5 (7 HSPs)
chr5 (165-232)||(4592938-4593005)
chr5 (168-232)||(8075812-8075876)
chr5 (168-207)||(32641730-32641769)
chr5 (173-207)||(546040-546074)
chr5 (173-207)||(2466778-2466812)
chr5 (165-207)||(8074528-8074570)
chr5 (167-230)||(40612640-40612703)
[»] chr4 (5 HSPs)
chr4 (167-232)||(42278128-42278193)
chr4 (168-232)||(50694829-50694893)
chr4 (37-107)||(22423027-22423097)
chr4 (165-195)||(47874641-47874671)
chr4 (38-107)||(8720374-8720443)
[»] chr7 (9 HSPs)
chr7 (168-232)||(10899052-10899116)
chr7 (165-232)||(7259663-7259730)
chr7 (173-232)||(45584475-45584534)
chr7 (39-107)||(45657462-45657530)
chr7 (163-207)||(48777331-48777375)
chr7 (168-232)||(7258355-7258419)
chr7 (38-105)||(18534792-18534859)
chr7 (167-207)||(42477459-42477499)
chr7 (167-195)||(45583763-45583791)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 10406115 - 10406221
Alignment:
Q  9 cccctttcttcgctgttaagtggtgaa-gcaaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    ||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10406115 cccctttcttcgcggttaagcggtgaaagcaaaaagtggtgggtcccacgattttgcaatctctctttcctatttctctcattttcaaataagagaaagt 10406214  T
Q  108 catcatc 114  Q
    |||||||    
T  10406215 catcatc 10406221  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 22912945 - 22912873
Alignment:
Q  35 agcaaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||  | | |||||||||||||||    
T  22912945 agcaaaaaatggtgggtcccacgattttgcaatctctcttccctatttctctagtatccaaacaagagaaagt 22912873  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 32898491 - 32898424
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  32898491 tccctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 35177472 - 35177539
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  35177472 tccctgactctgcacttccgttatcactttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 35178850 - 35178808
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  35178850 tccctgattctgcacttccgttatcactttagtccctgacgtt 35178808  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 2116336 - 2116268
Alignment:
Q  39 aaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||| |||||| |||||| | |||  |||||||||| ||||||||||| | || |||||||||||||||    
T  2116336 aaaaatgatggatcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagt 2116268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 10407620 - 10407563
Alignment:
Q  175 tgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||||||||||||||||| | |||||||||       ||||||||||||||||||    
T  10407620 tgcacttccgttatcactttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 24696220 - 24696326
Alignment:
Q  9 cccctttcttcgctgttaagtggtgaagc-aaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||| |||| ||| | |||||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||||||||||||||    
T  24696220 cccctttcttcgctgttatgtggagaaaccaaaaagtggtgggtcccacaatttttcaatctctcttccatatttttctcctttccaaacaagagaaagt 24696319  T
Q  108 catcatc 114  Q
    || ||||    
T  24696320 caccatc 24696326  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 17700595 - 17700637
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  17700595 tccctgactctgcacttccgttatcactttagtccctgacgtt 17700637  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 17701965 - 17701923
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  17701965 tccctgactctgcacttccgttatcactttagtccctgacgtt 17701923  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 52099588 - 52099518
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    ||||||||||||| ||| || | |||  |||||||||||||||||||||||| ||  ||||||||||||||    
T  52099588 caaaaagtgatggatcctactactttttaatctctctttcctatttctctccattctaaacaagagaaagt 52099518  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 36280360 - 36280321
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  36280360 ctgactctgcacttccgttatcactttagtccctgacgtt 36280321  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 52796587 - 52796517
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||||| | |||  |||||||||| ||||||||||| | || |||||  ||||||||    
T  52796587 caaaaagtgatgggtcccactactttttaatctctcttccctatttctcttcattccaaactggagaaagt 52796517  T

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Target: scaffold0072 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 46826 - 46896
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||||| | |||  |||||||||| ||||||||||||| || |||||||||||||||    
T  46826 caaaaagtgatgggtcccactactttttaatctctcttccctatttctctccattccaaacaagagaaagt 46896  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 5045727 - 5045797
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||||| | |||  |||||||||| ||||||||||||| || |||||||||||||||    
T  5045727 caaaaagtgatgggtcccactactttttaatctctcttccctatttctctccattccaaacaagagaaagt 5045797  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 252074 - 252144
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||||  | |||  |||||||||| ||||||||||| | || ||||||||| |||||    
T  252074 caaaaagtgatgggtcccattactttttaatctctcttccctatttctcttcattccaaacaagataaagt 252144  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 31219034 - 31219070
Alignment:
Q  167 cctgattctgcacttccgttatcactttattccctga 203  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  31219034 cctgactctgcacttccgttatcactttaatccctga 31219070  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 10616060 - 10615990
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||||||||||||||||||| | |||  |||||||||| ||||||||||| | ||||||||||||||||||    
T  10616060 caaaaagtgatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaagagaaagt 10615990  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 9339731 - 9339790
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  9339731 tctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 32665808 - 32665749
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||    
T  32665808 tctgcacttccgttatcactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 52439560 - 52439619
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||||| |||||||||||||||| |||||||||||       ||||||||||||||||||    
T  52439560 tctgcatttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 7945590 - 7945558
Alignment:
Q  175 tgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||| |||||||||||    
T  7945590 tgcacttccgttatcactttagtccctgacgtt 7945558  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 7073719 - 7073783
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  7073719 ctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 40000371 - 40000315
Alignment:
Q  174 ctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgat 230  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  40000371 ctgcacttccgttatcactttattccctgacgttaagaaaatctgttaagtgatgat 40000315  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 32765015 - 32765057
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  32765015 tccctgactctgcacttccgttatcactttaatccctgacgtt 32765057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 27869243 - 27869312
Alignment:
Q  38 aaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    ||||||| ||||||||||| | |||  |||||||||| ||||||||||| | |||||||||| |||||||    
T  27869243 aaaaagtaatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaatagaaagt 27869312  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 14704091 - 14704125
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||||| |||||||||||    
T  14704091 tctgcacttccgttatcactttagtccctgacgtt 14704125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 31091573 - 31091531
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| || ||||||||    
T  31091573 tccctgactctgcacttccgttatcactttagtctctgacgtt 31091531  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 32766285 - 32766243
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  32766285 tccctgactctgcacttccgttatcactttagtccttgacgtt 32766243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 34582716 - 34582674
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  34582716 tccctgaatgtgcacttccgttatcactttagtccctgacgtt 34582674  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 37472506 - 37472576
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    ||||||||||||| |||||  | |||  ||||||| |||||||||||||| | || |||||||||||||||    
T  37472506 caaaaagtgatggatcccattactttttaatctctatttcctatttctcttcgttccaaacaagagaaagt 37472576  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 9272559 - 9272519
Alignment:
Q  65 aatctctctttcctatttctctccttttcaaacaagagaaa 105  Q
    |||||||||| ||||||||||| | ||||||||||||||||    
T  9272559 aatctctcttccctatttctctgcatttcaaacaagagaaa 9272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 37607189 - 37607221
Alignment:
Q  175 tgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||| |||||||||||    
T  37607189 tgcacttccgttatcactttagtccctgacgtt 37607221  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 4592938 - 4593005
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  4592938 tccctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 8075876 - 8075812
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||||||||||||| ||||||||||||| |||||||||||       ||||||||||||||||||    
T  8075876 ctgattctgcactttcgttatcactttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 32641769 - 32641730
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  32641769 ctgactctgcacttccgttatcactttaatccctgacgtt 32641730  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 546074 - 546040
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||||| |||||||||||    
T  546074 tctgcacttccgttatcactttagtccctgacgtt 546040  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 2466812 - 2466778
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||||||||||||||||| |||||||||||    
T  2466812 tctgcacttccgttatcactttagtccctgacgtt 2466778  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 8074528 - 8074570
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||| ||||||||||||||||||||||| | |||||||||    
T  8074528 tccctgactctgcacttccgttatcactttagttcctgacgtt 8074570  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 40612703 - 40612640
Alignment:
Q  167 cctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgat 230  Q
    ||||| ||||||||||||||||||||||| | |||||||||       ||||||||||||||||    
T  40612703 cctgactctgcacttccgttatcactttaattcctgacgttaaaaaaatctgttaagtgatgat 40612640  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 42278128 - 42278193
Alignment:
Q  167 cctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  42278128 cctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 50694829 - 50694893
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||||||||||||||||||||| ||||| |||||||||||       ||||||||||||||||||    
T  50694829 ctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 22423027 - 22423097
Alignment:
Q  37 caaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    ||||||||||||| |||||| | |||  |||||||||| ||||||||||| | || |||||||||||||||    
T  22423027 caaaaagtgatggttcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagt 22423097  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 47874641 - 47874671
Alignment:
Q  165 tccctgattctgcacttccgttatcacttta 195  Q
    |||||||||||||||||||||||||||||||    
T  47874641 tccctgattctgcacttccgttatcacttta 47874671  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 8720374 - 8720443
Alignment:
Q  38 aaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||| ||| |||||||||| | |||  |||||||||||||||||||||| | || ||||| |||||||||    
T  8720374 aaaaggtggtgggtcccactacttttaaatctctctttcctatttctcttcattccaaactagagaaagt 8720443  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 10899116 - 10899052
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  10899116 ctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 7259730 - 7259663
Alignment:
Q  165 tccctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  7259730 tccctgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 45584534 - 45584475
Alignment:
Q  173 tctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  45584534 tctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 45657530 - 45657462
Alignment:
Q  39 aaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaagt 107  Q
    |||| ||||||||||||| | |||  |||||||||| ||||||||||| | || |||||||||||||||    
T  45657530 aaaaatgatgggtcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagt 45657462  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48777331 - 48777375
Alignment:
Q  163 attccctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  48777331 attccctgactctgcacttccgttatcactttagtccatgacgtt 48777375  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 7258355 - 7258419
Alignment:
Q  168 ctgattctgcacttccgttatcactttattccctgacgttnnnnnnntctgttaagtgatgatgt 232  Q
    |||| |||||||||| |||||||||||| |||||||||||       ||||||||||||||||||    
T  7258355 ctgactctgcacttctgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 18534792 - 18534859
Alignment:
Q  38 aaaaagtgatgggtcccacgattttgcaatctctctttcctatttctctccttttcaaacaagagaaa 105  Q
    |||| ||| |||||||||| |||||  |||||||||| ||||||||||| | || |||||||||||||    
T  18534792 aaaaggtggtgggtcccactattttttaatctctcttccctatttctcttcattccaaacaagagaaa 18534859  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 42477459 - 42477499
Alignment:
Q  167 cctgattctgcacttccgttatcactttattccctgacgtt 207  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  42477459 cctgactctgcacttccgttatcattttaatccctgacgtt 42477499  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 45583763 - 45583791
Alignment:
Q  167 cctgattctgcacttccgttatcacttta 195  Q
    |||||||||||||||||||||||||||||    
T  45583763 cctgattctgcacttccgttatcacttta 45583791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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