View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_247 (Length: 239)
Name: NF1498_high_247
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_247 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18218513 - 18218734
Alignment:
| Q |
1 |
ataaatgacatccaggcatatgaagtttgcaacataatattagcaattatattagcaattggctagtttaatgttaacattcaatttgcaatctcatttg |
100 |
Q |
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| T |
18218513 |
ataaatgacatccaggcatatgaagtttgcaacataatattagcaattatattagcaattggctagtttaatgttaacattcaatttgcaatctcatttg |
18218612 |
T |
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| Q |
101 |
caacataattgtaatataacttcaatcattaaatgtcaaataagtaaaaatagttgccacactgcctataagttggctcaatctactattaccaacagag |
200 |
Q |
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| T |
18218613 |
caacataattgtaatataacttcaatcattaaatgtcaaataagtaaaaatagttgccacactgcctataagttggctcaatctactattaccaacagag |
18218712 |
T |
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| Q |
201 |
tctcaaaatgatgtggcttctt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
18218713 |
tctcaaaatgatgtggcttctt |
18218734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 43010730 - 43010775
Alignment:
| Q |
165 |
cctataagttggctcaatctactattaccaacagagtctcaaaatg |
210 |
Q |
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| T |
43010730 |
cctataagttggctcaatctactattaccaacagagtctcaaaatg |
43010775 |
T |
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