View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_248 (Length: 239)
Name: NF1498_high_248
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_248 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27778346 - 27778566
Alignment:
| Q |
1 |
atctagatgtttctataaacaattccttactacaaatacttctaggaaaaggtttatagcatgaaaaatctactagatatatatttttggaacatttctt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27778346 |
atcttgatgtttctataaacaattccttactacaaatacttctaggaaaaggtttatagcatgaaaaatctactagatatatatttttggaacatttctt |
27778445 |
T |
|
| Q |
101 |
taggtaaaaggttagtatagatgctattaaggtacaccatagtaaaagtgaaaaaatgttactagagttgaataatatttggatatttagagggaagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27778446 |
taggtaaaaggttagtatagatgctattaaggtacaccatagtaaaagtgaaaaaatgttactagagttgaataatatttggatatttagagggaagtct |
27778545 |
T |
|
| Q |
201 |
ccaatgatagggagggtatag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
27778546 |
ccaatgatagggagggtatag |
27778566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 19678271 - 19678447
Alignment:
| Q |
15 |
ataaacaattccttactacaaatacttctaggaaaaggtttatagcatgaaaaatctactagatatatatttttggaacatttctttaggtaaaaggtta |
114 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||| |||| ||| || |||||||||| ||||| || ||||||||| ||||||| |||| |
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| T |
19678271 |
ataaacaattccttactacaaatgccgttaggaaaaggtttataacatgcaaagtccactagatataccttttttgagcatttcttttggtaaaatgtta |
19678370 |
T |
|
| Q |
115 |
gtatagatgctattaaggtacaccatagtaaaagtgaaaaaatgttactagagttgaataatatttggatatttaga |
191 |
Q |
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|||| | |||||| ||| |||||| | ||||||||| ||||| |||||| | ||||||||||||||| |||||||| |
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|
| T |
19678371 |
ctataaaggctattgaggcacaccacattaaaagtgagaaaatattactatacttgaataatatttgggtatttaga |
19678447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 19748302 - 19748504
Alignment:
| Q |
15 |
ataaacaattccttactacaaatacttctaggaaaaggtttatagcatgaaaaatctactagatatatatttttggaacatttctttaggtaaaaggtta |
114 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||| |||| ||| || |||||||||| ||||| || ||||||||| ||||||| |||| |
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| T |
19748302 |
ataaacaattccttactacagatgccgttaggaaaaggtttataacatgcaaagtccactagatataccttttttgagcatttcttttggtaaaatgtta |
19748401 |
T |
|
| Q |
115 |
gtatagatgctattaaggtacaccatagtaaaagtgaaaaaatgttactagagttgaataatatttggatatttagagggaagtctccaatgatagggag |
214 |
Q |
| |
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|||| | | |||| ||| |||||| | ||||||||| ||||| |||||| | ||||||||||||||| |||||||| |||||| |||||||| ||| |
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|
| T |
19748402 |
ctatataggatattgaggcacaccacattaaaagtgagaaaatattactatacttgaataatatttgggtatttaga---tagtctctaatgatagagag |
19748498 |
T |
|
| Q |
215 |
ggtata |
220 |
Q |
| |
|
|||||| |
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|
| T |
19748499 |
ggtata |
19748504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 19791504 - 19791302
Alignment:
| Q |
15 |
ataaacaattccttactacaaatacttctaggaaaaggtttatagcatgaaaaatctactagatatatatttttggaacatttctttaggtaaaaggtta |
114 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||| |||| ||| || |||||||||| ||||| || ||||||||| ||||||| |||| |
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| T |
19791504 |
ataaacaattccttactacagatgccgttaggaaaaggtttataacatgcaaagtccactagatataccttttttgagcatttcttttggtaaaatgtta |
19791405 |
T |
|
| Q |
115 |
gtatagatgctattaaggtacaccatagtaaaagtgaaaaaatgttactagagttgaataatatttggatatttagagggaagtctccaatgatagggag |
214 |
Q |
| |
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|||| | | |||| ||| |||||| | ||||||||| ||||| |||||| | ||||||||||||||| |||||||| |||||| |||||||| ||| |
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| T |
19791404 |
ctatataggatattgaggcacaccacattaaaagtgagaaaatattactatacttgaataatatttgggtatttaga---tagtctctaatgatagagag |
19791308 |
T |
|
| Q |
215 |
ggtata |
220 |
Q |
| |
|
|||||| |
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|
| T |
19791307 |
ggtata |
19791302 |
T |
|
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