View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_256 (Length: 238)
Name: NF1498_high_256
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_256 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 518030 - 517811
Alignment:
| Q |
1 |
tatgccaatttatgctaactccacaattatcaccacatggtagtttcttaggtaccctaaaatgctttaattttgcccaagcaactgtcttcaatgttct |
100 |
Q |
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| T |
518030 |
tatgccaatttatgctaactccacaattatcaccacatggtaatttcttaggtaccctaaaatgctttaatttcgcccaagcaactgtcttcaatgttct |
517931 |
T |
|
| Q |
101 |
attctcaaaaggtacaagaagagcttctgaaggtaaaagcattgctcttgcatttggattacaatgatgatttgtgccatcatcatcacaaccacatgca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
517930 |
attctcgaaaggtacaagaagagcttctgaaggtaaaagcattgctcttgcatttggattacaatgacgatttgtgtcatcatcatcacaaccacatgca |
517831 |
T |
|
| Q |
201 |
cacgtgttgcatggcacaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
517830 |
cacgtgttgcatggcacaat |
517811 |
T |
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