View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_276 (Length: 224)
Name: NF1498_high_276
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_276 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 54642004 - 54642196
Alignment:
| Q |
16 |
atgaaaccaatatagcgatcagaaaaccttatgcttgatgtttcggtgttcaaaacatccacaatgacagcaccaaatgtgtccttttcgtacaacatat |
115 |
Q |
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| T |
54642004 |
atgaaaccaatatagcgatcagaaaaccttatgcttgatgtttcagtgttcaaaacatccacaatgacagcaccaaatgtgtccttttcgtacaacatat |
54642103 |
T |
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| Q |
116 |
gaattgcatcccttatagtgcctccagattttatttccaacacttaacataggaaggaagaaaacaacgttggagggcattgaatcacaaaac |
208 |
Q |
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| T |
54642104 |
gaattgcatcccttatagtgcctccagattttatttccaacacttaacataggaaggaagaaaacaacgttggagggcattgaatcacaaaac |
54642196 |
T |
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