View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_278 (Length: 223)
Name: NF1498_high_278
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_278 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 48252090 - 48251870
Alignment:
| Q |
3 |
catcaatatccgtagctagttcctttctgctagactgtacagagaaacaagtgtattcaatgcaagaaagttcacaaacattctgatatgatttgtcagt |
102 |
Q |
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| T |
48252090 |
catcaatatccgtagctagttcctttctgctagactgtacagagaaacaagtgtattcaatgcaagaaagttcacaaacattctgatatgatttgtcagt |
48251991 |
T |
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| Q |
103 |
gaattcattgactttagaatttcttcaatttctcattttcaagaaatactaatataaacgtgtataacataatgacgaatgtttatgtatttggcctacc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48251990 |
gaattcattgactttagaatttcttcaatttctcattttcaagaaatactaatataaacgtgtataacataatgacgaatgtttatgtatttggcctacc |
48251891 |
T |
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| Q |
203 |
ttaaacagaaggtatcggtac |
223 |
Q |
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||||||||||||||||||||| |
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| T |
48251890 |
ttaaacagaaggtatcggtac |
48251870 |
T |
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