View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_280 (Length: 222)
Name: NF1498_high_280
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_280 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 27230156 - 27230371
Alignment:
| Q |
2 |
tactaataataaaagtaatagagatcttgttcgatttatttgtattttgttgatatatcgttccatttttctttttattatgaatacctcattaataatt |
101 |
Q |
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| T |
27230156 |
tactaataataaaagtaatagagatctcgttcgatttatttgtattttgttgatatatcgttccatttttctttttattatgaatacctcattaataatt |
27230255 |
T |
|
| Q |
102 |
gagtcaaggttcacaatacacaatcacaaattgttaatgcaattttcctttattttgagaaacaaataaataaactttttgcataa-tattgactgcgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |
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| T |
27230256 |
gagtcaaggttcacaatacacaatcacaaattgttaatgcaattttcctttattttgagcaacaaataaataaactttttgcataactattgactgcaat |
27230355 |
T |
|
| Q |
201 |
tatactttcatttctc |
216 |
Q |
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||||||||||| |||| |
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| T |
27230356 |
tatactttcatgtctc |
27230371 |
T |
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