View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_284 (Length: 217)
Name: NF1498_high_284
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_284 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 19475640 - 19475855
Alignment:
| Q |
1 |
tccattttcttcaagataaaaccattttaatcactggtgccactggttttcttgctaaaagtatgaatgagtaccctctaatttctctatgttttttctt |
100 |
Q |
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| T |
19475640 |
tccattttcttcaagataagaccattttaatcactggtgccactggttttcttgctaaaagtatgaatgagtaccctctaatttctcaatgttttttctt |
19475739 |
T |
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| Q |
101 |
cttcttctttatgtaccttaaaagatggtactataatatgtgcacttatgtactttgatttgtatgtttgacagttttgttggagaagatattgagagtt |
200 |
Q |
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| T |
19475740 |
cttcttctttatgtacctt-aaagatggtactataatatgtgcacttatgtacttggatttgtatgtttgacagttttgttggagaagatattgagagtt |
19475838 |
T |
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| Q |
201 |
caaccaaatgttaagaa |
217 |
Q |
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| T |
19475839 |
caaccaaatgttaagaa |
19475855 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 19486419 - 19486477
Alignment:
| Q |
160 |
ttgtatgtttgacagttttgttggagaagatat--tgagagttcaaccaaatgttaaga |
216 |
Q |
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| T |
19486419 |
ttgtatgtttgattgtttttttggagaagataacatgagagttcaaccaaatgttaaga |
19486477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 36202747 - 36202713
Alignment:
| Q |
180 |
ttggagaagatattgagagttcaaccaaatgttaa |
214 |
Q |
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| T |
36202747 |
ttggagaaggtattgagagttcaaccaaatgttaa |
36202713 |
T |
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