View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_288 (Length: 217)
Name: NF1498_high_288
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_288 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 52972836 - 52972627
Alignment:
| Q |
8 |
tggtatttatctccactcaactcacacacacacgtatatataaagtgtgatgacatattctcatctcataaaaataaaaggaaataagtgatgagtttca |
107 |
Q |
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| T |
52972836 |
tggtatttatctccactcaactcacacacacacatatatataaagtgtgatgacatattctcatctcatgaaaataaaaggaaataagtgatgagtttca |
52972737 |
T |
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| Q |
108 |
tgtcctccttcgaggcatggacgtaacatttccgaacaaaaaatcttcaatcaatgtctcaatgtcgtcgggatgatactttatgtacttttcaatatgt |
207 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52972736 |
tgtcctccttcgaggcatggacgtaacatttccaacaaaaaaatcgtcaatcaatgtctcaatgtcgtcgggatgatactttatgtacttgtcaatatgt |
52972637 |
T |
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| Q |
208 |
cttcctgttt |
217 |
Q |
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| T |
52972636 |
cttcctgttt |
52972627 |
T |
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