View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_296 (Length: 211)
Name: NF1498_high_296
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_296 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32601081 - 32601274
Alignment:
| Q |
1 |
caactctttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattat |
100 |
Q |
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| T |
32601081 |
caactatttcccacacttttggcccatgtagcaggatcttcccatcccctatgtttcaaaaaagaaattataatgaaatataaaatgaaatatcaattat |
32601180 |
T |
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| Q |
101 |
gtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgg |
194 |
Q |
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| T |
32601181 |
gtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgg |
32601274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32590610 - 32590803
Alignment:
| Q |
1 |
caactctttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattat |
100 |
Q |
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| T |
32590610 |
caactatttcccacacttttggcccatgttgctggatcttcctttcccctatgtttcaaaaaagcaagtataataaaatagaaaatgaaatatcaattat |
32590709 |
T |
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| Q |
101 |
gtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgg |
194 |
Q |
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| T |
32590710 |
gtatgagaaacattatcactaattcaactcaccattcacacacagagaagaagattggccttccagattttaataaggcttcactcattggtgg |
32590803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 24883258 - 24883189
Alignment:
| Q |
128 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgggta |
197 |
Q |
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| T |
24883258 |
ctcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggta |
24883189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 34578429 - 34578622
Alignment:
| Q |
1 |
caactctttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattat |
100 |
Q |
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||||| |||||||||||||||||||| || || ||||||||||||||||| ||| | ||||||| | || ||||||||||||||||||| |||| |
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| T |
34578429 |
caactatttcccacacttttggcccacgttgcaggatcttcccatcccctgaattttagaaaagaattaagtgagaaatagaaaatgaaatattgtttat |
34578528 |
T |
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| Q |
101 |
gtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgg |
194 |
Q |
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| T |
34578529 |
gtatgagaaacaccgcgatcaattcaactcaccattcacacatagagaagaagattggccttccggagtttaataaagcttcactcattggtgg |
34578622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 35124249 - 35124318
Alignment:
| Q |
128 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgggta |
197 |
Q |
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| T |
35124249 |
ctcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggta |
35124318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 34594260 - 34594329
Alignment:
| Q |
128 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtgggta |
197 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||||| |
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| T |
34594260 |
ctcaccattcacacattgagaagaagattgaccttccagatttcattaaggcttcactcattggcgggta |
34594329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34594129 - 34594183
Alignment:
| Q |
1 |
caactctttcccacacttttggcccatgtagctggatcttcccatcccctatgtt |
55 |
Q |
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| T |
34594129 |
caactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgtt |
34594183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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