View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_3 (Length: 847)
Name: NF1498_high_3
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 68 - 660
Target Start/End: Complemental strand, 38656417 - 38655818
Alignment:
| Q |
68 |
acacattagttgttttgagagttacacttttttataattacatgttatggaaatggattctctcatttgtaatttacacatgaaagagtaaagtgttaac |
167 |
Q |
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| T |
38656417 |
acacattagttgttttgagagttacacttttttataattatatgttatggaaatgaattctctcatttgtaatttacacatgaaagagtaaagtgttaat |
38656318 |
T |
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| Q |
168 |
tatcaccatccaaattcgatttatctaaattcctctatatttctctcacttgatgaattgtgatgaatcagactttactctctcacgtgt---------- |
257 |
Q |
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| T |
38656317 |
tatcaccatccaaatttaatttatctaaattcctctatatttctcttacttgatgaattgtgatgaatcagactttactctctcacgtgtaaattacaca |
38656218 |
T |
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| Q |
258 |
-ggaagaatccattttcacaaggtacaacaaatacacacatacttattttgcacggtgtaaacttttgttgggaacttgcatcatcctcaccaaatctca |
356 |
Q |
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| T |
38656217 |
tggaagaatccattttcacaaggtagaacaaatacacacatacttattttgcacggtgtaaacttttgttgggaacttgcatcatcctcaccaaatctca |
38656118 |
T |
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| Q |
357 |
tgtgtctttattaaataagcaatatgggttgtctattaagcatgaatttgattagatatagttagatttattgtttggtagtaatgggtttatgacatga |
456 |
Q |
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| T |
38656117 |
tgtgtctttattaaataagcaatatgggttgtctattaagcatggatttgattagatatagttagatatattgcttggtagtaatgggtttatgacatga |
38656018 |
T |
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| Q |
457 |
atgaagaaactatgtttccattgaaacccacatgttatgtgtagtttagttcatgaaatagatgaattagaagtgataactggttagaatgttagttttt |
556 |
Q |
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| T |
38656017 |
atgaaga----atgtttccattgaaacccacatgttatgtgtagtttagttcatgaaatagatgaattagaagcgataattggttagaatgttagttttt |
38655922 |
T |
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| Q |
557 |
tccaataactaattagtgggttaacgttgaagatataatgcaagttagctacgtcacaaagaagagaaaaataggtttttcatagaaatttttaagcttg |
656 |
Q |
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| T |
38655921 |
tccaataactaattagtgggttaacgttgaagatataatgcaagttagctacgtcacaaagaagagaaaaataggtttttcatagaaatttttaagcttg |
38655822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 752 - 831
Target Start/End: Complemental strand, 38655727 - 38655648
Alignment:
| Q |
752 |
gtacatgaccagaagacttttgttactgatgagtattgaagcttgccttggtgtacttttatgcaactagtcttgtactt |
831 |
Q |
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| T |
38655727 |
gtacatgaccagaagacttttgttactgatgagtattgaagcttgccttggtgtacttttatgcaactagtcttgtactt |
38655648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 38656445 - 38656408
Alignment:
| Q |
13 |
aatatgaatacacgggtaacaaataaaaacccattagt |
50 |
Q |
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| T |
38656445 |
aatatgaatacacggataacaaataaaaacacattagt |
38656408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 49655310 - 49655389
Alignment:
| Q |
119 |
aatggattctctcatttgtaatttacacatgaaagagtaaagtgttaactatcaccatccaaattcgatttatctaaatt |
198 |
Q |
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| T |
49655310 |
aatggattctcacagatgtaatttacacataagagagtaaagtgtcatctctcaccattcaaattcactttgtctaaatt |
49655389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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