View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_30 (Length: 568)

Name: NF1498_high_30
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_30
NF1498_high_30
[»] chr7 (19 HSPs)
chr7 (335-558)||(25478133-25478356)
chr7 (225-328)||(22794833-22794936)
chr7 (234-328)||(44183973-44184067)
chr7 (263-328)||(26387659-26387724)
chr7 (442-558)||(25485146-25485262)
chr7 (263-334)||(3265330-3265401)
chr7 (268-328)||(14791499-14791559)
chr7 (268-324)||(37257638-37257694)
chr7 (425-544)||(25638251-25638370)
chr7 (285-334)||(37814606-37814655)
chr7 (272-340)||(38391995-38392063)
chr7 (267-334)||(7359271-7359338)
chr7 (281-327)||(33138584-33138630)
chr7 (268-334)||(37481564-37481630)
chr7 (237-334)||(28731079-28731176)
chr7 (268-313)||(36207451-36207496)
chr7 (268-324)||(47230608-47230665)
chr7 (268-324)||(17480385-17480441)
chr7 (268-324)||(17572773-17572829)
[»] chr4 (23 HSPs)
chr4 (231-328)||(37061962-37062059)
chr4 (222-334)||(8037848-8037960)
chr4 (222-328)||(41580276-41580382)
chr4 (226-328)||(36908374-36908477)
chr4 (222-313)||(37734957-37735048)
chr4 (264-313)||(35415739-35415788)
chr4 (269-328)||(38673086-38673145)
chr4 (268-334)||(30508780-30508846)
chr4 (226-298)||(45273400-45273472)
chr4 (263-314)||(24993313-24993364)
chr4 (269-319)||(35196743-35196793)
chr4 (264-313)||(7259777-7259826)
chr4 (268-328)||(26947190-26947250)
chr4 (222-328)||(43754796-43754899)
chr4 (263-313)||(4965122-4965172)
chr4 (269-334)||(26910688-26910753)
chr4 (268-324)||(1913948-1914004)
chr4 (263-318)||(47006102-47006157)
chr4 (268-334)||(44434048-44434114)
chr4 (282-331)||(9516290-9516339)
chr4 (301-334)||(26910767-26910800)
chr4 (267-331)||(52741570-52741637)
chr4 (272-328)||(16859258-16859314)
[»] chr6 (14 HSPs)
chr6 (224-328)||(13210237-13210341)
chr6 (222-328)||(19636242-19636348)
chr6 (257-328)||(19636439-19636510)
chr6 (222-285)||(19248361-19248424)
chr6 (268-322)||(18688966-18689020)
chr6 (263-324)||(6560257-6560318)
chr6 (267-334)||(19254978-19255045)
chr6 (262-313)||(26472677-26472728)
chr6 (226-313)||(34707379-34707466)
chr6 (296-334)||(12835534-12835572)
chr6 (273-334)||(10663887-10663948)
chr6 (278-334)||(7302671-7302727)
chr6 (263-312)||(26281103-26281152)
chr6 (278-334)||(7302628-7302684)
[»] chr3 (19 HSPs)
chr3 (222-334)||(459144-459256)
chr3 (222-328)||(34816626-34816732)
chr3 (222-328)||(51460122-51460228)
chr3 (263-331)||(38207315-38207383)
chr3 (221-293)||(42676918-42676990)
chr3 (254-323)||(5163977-5164046)
chr3 (268-328)||(37479392-37479452)
chr3 (265-334)||(35570578-35570647)
chr3 (268-328)||(16106334-16106394)
chr3 (267-313)||(21452775-21452821)
chr3 (267-313)||(21457949-21457995)
chr3 (274-340)||(35508418-35508484)
chr3 (263-309)||(49828206-49828252)
chr3 (67-120)||(27011962-27012015)
chr3 (263-324)||(52659950-52660010)
chr3 (268-313)||(1815259-1815304)
chr3 (264-309)||(12010827-12010872)
chr3 (271-328)||(22989198-22989255)
chr3 (268-328)||(35936696-35936756)
[»] chr8 (7 HSPs)
chr8 (222-324)||(25487506-25487608)
chr8 (269-334)||(9280569-9280634)
chr8 (263-334)||(12468888-12468959)
chr8 (264-313)||(10658618-10658667)
chr8 (264-317)||(24585605-24585658)
chr8 (296-340)||(2100956-2101000)
chr8 (264-334)||(35205461-35205531)
[»] chr2 (13 HSPs)
chr2 (264-336)||(1576461-1576533)
chr2 (222-325)||(19064256-19064359)
chr2 (263-331)||(16427799-16427867)
chr2 (225-328)||(27002474-27002577)
chr2 (426-558)||(35054306-35054438)
chr2 (222-329)||(8063015-8063122)
chr2 (267-313)||(5760437-5760483)
chr2 (280-334)||(12516659-12516713)
chr2 (67-120)||(44247109-44247162)
chr2 (238-328)||(19427797-19427885)
chr2 (263-308)||(37141226-37141271)
chr2 (65-121)||(20713628-20713684)
chr2 (302-334)||(42834186-42834218)
[»] chr1 (21 HSPs)
chr1 (226-334)||(44558000-44558108)
chr1 (222-328)||(11330939-11331045)
chr1 (222-328)||(11488960-11489066)
chr1 (267-331)||(21822933-21822997)
chr1 (222-334)||(24855115-24855227)
chr1 (221-328)||(5207598-5207705)
chr1 (226-310)||(22771344-22771429)
chr1 (226-310)||(23077138-23077223)
chr1 (263-312)||(21781233-21781282)
chr1 (249-328)||(41910035-41910114)
chr1 (265-328)||(42048468-42048531)
chr1 (281-339)||(36523717-36523775)
chr1 (263-328)||(16910041-16910106)
chr1 (96-155)||(24019993-24020053)
chr1 (268-328)||(40491139-40491199)
chr1 (264-334)||(50302579-50302649)
chr1 (264-313)||(10423046-10423095)
chr1 (272-328)||(7423301-7423357)
chr1 (65-121)||(30180409-30180465)
chr1 (264-292)||(34738712-34738740)
chr1 (232-292)||(47746790-47746850)
[»] chr5 (18 HSPs)
chr5 (245-328)||(12891469-12891552)
chr5 (263-312)||(20895408-20895457)
chr5 (263-331)||(20906270-20906338)
chr5 (269-328)||(17540948-17541007)
chr5 (263-334)||(34873504-34873575)
chr5 (271-334)||(36879993-36880056)
chr5 (222-328)||(24229411-24229517)
chr5 (263-312)||(20919570-20919619)
chr5 (270-334)||(29048622-29048686)
chr5 (264-335)||(37866908-37866979)
chr5 (267-340)||(32746350-32746423)
chr5 (226-334)||(9035348-9035456)
chr5 (296-334)||(42519486-42519524)
chr5 (263-334)||(4799649-4799720)
chr5 (268-310)||(9474857-9474899)
chr5 (267-309)||(29814068-29814110)
chr5 (268-334)||(35503541-35503607)
chr5 (302-334)||(32746305-32746337)
[»] scaffold0265 (1 HSPs)
scaffold0265 (267-331)||(9812-9876)
[»] scaffold0061 (1 HSPs)
scaffold0061 (263-309)||(63620-63666)
[»] scaffold0017 (1 HSPs)
scaffold0017 (263-309)||(134966-135012)
[»] scaffold0002 (3 HSPs)
scaffold0002 (271-313)||(427594-427636)
scaffold0002 (288-334)||(427639-427685)
scaffold0002 (282-334)||(412234-412285)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 558
Target Start/End: Complemental strand, 25478356 - 25478133
Alignment:
Q  335 ctaaacatctatttcaaatttcc-ccttattttcattggttaataataataatttagtgacttttgcttcttttaggccagaatataagacgattgaaag 433  Q
    |||||||| |||| ||||||| | |||||||||||||  ||||  ||||||||||||||| |||| || | || ||| ||||||||||  |||||||||     
T  25478356 ctaaacatatattccaaattttcaccttattttcattctttaactataataatttagtgattttt-ctgcattcaggtcagaatataaagcgattgaaat 25478258  T
Q  434 tattgtccaggctgtcataaaaaagttgggtcataaattcttaggtacagctgatgaacttattggaatacaacctcaagtacaagcattagaatgtctt 533  Q
    ||||||||||||||| ||| |||||||||||||||| |||| ||||   |||||||| || || ||||||||| ||| |||| ||| |||||||| | |     
T  25478257 tattgtccaggctgtaatagaaaagttgggtcataagttctcaggttttgctgatgacctgatcggaatacaaactcgagtagaagaattagaatttatg 25478158  T
Q  534 ttaaaactaagttcagatgatgatg 558  Q
    ||| |||||||||||||||||||||    
T  25478157 ttagaactaagttcagatgatgatg 25478133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 22794936 - 22794833
Alignment:
Q  225 cacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    ||||| ||||||||||||||| ||||| |||||||||| ||| |||||| ||| ||||||||||| || ||||||  |||||||||||| ||||||||||    
T  22794936 cacaaccaatcaaaacattcttaattgttacgtttgacacacataaattgaaatcattaattgatatggcgattcagaatgttttgattggttgtgtgtg 22794837  T
Q  325 caaa 328  Q
    ||||    
T  22794836 caaa 22794833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 44183973 - 44184067
Alignment:
Q  234 tcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||||||||||||  |||||||  |||| |||||||||| |||||||||||||||| ||||  |||||||||||| ||||||||||||||    
T  44183973 tcaaaacattctgaattgtcacgtttggtccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttgtgtgtgcaaa 44184067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 26387659 - 26387724
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||| |||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  26387659 ccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtgcaaa 26387724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 558
Target Start/End: Original strand, 25485146 - 25485262
Alignment:
Q  442 aggctgtcataaaaaagttgggtcataaattcttaggtacagctgatgaacttattggaatacaacctcaagtacaagcattagaatgtcttttaaaact 541  Q
    ||||||| ||||||||||||||||  | ||||| |||  |  ||||||| ||||||||||||||||||||  || ||||||||||    |||||||||||    
T  25485146 aggctgtaataaaaaagttgggtcgcacattctcaggatccactgatgaccttattggaatacaacctcatatagaagcattagagaaccttttaaaact 25485245  T
Q  542 aagttcagatgatgatg 558  Q
    ||||||||| |||||||    
T  25485246 aagttcagaggatgatg 25485262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 3265330 - 3265401
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||||||| |||||    
T  3265330 ccacataaattaaaaacattaattgatgtgacaattctaaatattttaattggttatgtgtgcaaaattgtt 3265401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 14791559 - 14791499
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||    
T  14791559 taaattaaaaacatgaattgatgttacgattctaagtgtttagattagttatgtgtgcaaa 14791499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 37257638 - 37257694
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    |||||||||||||||||||||||||  |||||| |||||||||||| ||||||||||    
T  37257638 taaattaaaaacattaattgatgtggggattctgaatgttttgattggttgtgtgtg 37257694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 544
Target Start/End: Original strand, 25638251 - 25638370
Alignment:
Q  425 gattgaaagtattgtccaggctgtcataaaaaagttgggtcataaattct-taggtacagctgatgaacttattggaatacaacctcaagtacaagcatt 523  Q
    ||||||||  |||||  ||||||| |||||||| ||||||||||||||||  |||| | |||||||| |||||||||||||||||||   || |||||||    
T  25638251 gattgaaaaaattgttgaggctgtgataaaaaaattgggtcataaattctccaggt-ctgctgatgatcttattggaatacaacctcctatagaagcatt 25638349  T
Q  524 agaatgtcttttaaaactaag 544  Q
    |||  ||| | ||||||||||    
T  25638350 agagagtcgtctaaaactaag 25638370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 37814655 - 37814606
Alignment:
Q  285 ttgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| |||||    
T  37814655 ttgatgtgacgattttaaatgttttgattgattgtgtgtgcaaatttgtt 37814606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 38392063 - 38391995
Alignment:
Q  272 ttaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttctaaac 340  Q
    ||||||||||| ||||||||||| ||| | | |||||| ||| |||||||||||||| ||||| |||||    
T  38392063 ttaaaaacattcattgatgtgacaattttgagtgttttaattggttgtgtgtgcaaaattgttttaaac 38391995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 7359338 - 7359271
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||||||||||||   | || |||||||||| |||  ||||||| |||||||||||    
T  7359338 gtaaattaaaaacattaattgatgtagtggttttaaatgttttaattgattgtgtgcgcaaagttgtt 7359271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 33138630 - 33138584
Alignment:
Q  281 ttaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaa 327  Q
    |||||| ||||||| |||||||||||||| ||| |||||||||||||    
T  33138630 ttaatttatgtgacaattctaaatgttttaattggttgtgtgtgcaa 33138584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 37481630 - 37481564
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||| ||||| ||| |||||||||| | ||| |||||| || |||| ||||||||||||||||||||    
T  37481630 taaactaaaatcatcaattgatgtgtcaattttaaatgattagattggttgtgtgtgcaaagttgtt 37481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 28731079 - 28731176
Alignment:
Q  237 aaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||  | ||||||| ||| ||||||||||  |||||||||| | || ||||  ||| ||||||||  |||| |||||||| |||||    
T  28731079 aaacattctgaattgtcaggtttgactcacataaattaaaattattaattgatctcacaattcagaatcttttgattgattgtatgtgcaaaattgtt 28731176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 36207496 - 36207451
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||    
T  36207496 taaattaaaaacattaattgatgtggcaattttaaatattttgatt 36207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 47230608 - 47230665
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaat-gttttgattagttgtgtgtg 324  Q
    |||||||||||| |||||| ||||||| |||||||||  |||||||| ||||||||||    
T  47230608 taaattaaaaactttaattaatgtgacaattctaaatatttttgattggttgtgtgtg 47230665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 17480441 - 17480385
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    |||||| ||||||| |||||||||||| ||| ||||| ||||||||  |||||||||    
T  17480441 taaatttaaaacataaattgatgtgacaattataaatattttgattgattgtgtgtg 17480385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 17572773 - 17572829
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    |||||| ||||||| |||||||||||| ||| ||||| ||||||||  |||||||||    
T  17572773 taaatttaaaacataaattgatgtgacaattataaatattttgattgattgtgtgtg 17572829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 37062059 - 37061962
Alignment:
Q  231 caatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  37062059 caatcaaaacattctgaattgtcacgtttgacccacataaattaaaatcattaattgatgtgacaattctaaatgttttgattggttgtgtgtgcaaa 37061962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 8037848 - 8037960
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||||| ||||||||||| |||||||  | ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || ||||    
T  8037848 acacacaatctatcaaaacattatgaattgtcatgtttgacccacgtaaattaaaaatattaattgatgtggcgattctaaatattttgattggtcgtgt 8037947  T
Q  322 gtgcaaagttgtt 334  Q
    |||||||||||||    
T  8037948 gtgcaaagttgtt 8037960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 41580276 - 41580382
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||||| ||||||| ||  |||||||||| |||| ||||  |||||||||||| |||||||    
T  41580276 acacacaatcgatcaaaatattatgaattgccacgtttgacccacataaattacaattattaattgatatgacaattcagaatgttttgattggttgtgt 41580375  T
Q  322 gtgcaaa 328  Q
    |||||||    
T  41580376 gtgcaaa 41580382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 36908374 - 36908477
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaatt-aaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||| ||||  ||||||||||||  |||| ||||    
T  36908374 acaaccaattaaaacattctgaattgctatgtttggcccacgttaattaaaaaacattaattgatgtgacaattcagaatgttttgattgattgtttgtg 36908473  T
Q  325 caaa 328  Q
    ||||    
T  36908474 caaa 36908477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 37734957 - 37735048
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    |||||||| |||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||||||| | ||||  ||||||||||||    
T  37734957 acacacaaccaatcaaaacattctgaattgccacatttggcccacataaattaaaatcattaattgatgtgtcaattcagaatgttttgatt 37735048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 35415739 - 35415788
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35415739 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttatgatt 35415788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 38673145 - 38673086
Alignment:
Q  269 aaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  38673145 aaattataaacattaattgatgtgacaattttaaatgttttgattagtagtgtgtgcaaa 38673086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 30508846 - 30508780
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||||| |||||| | ||| ||||||||||||||  |||||||||||||||||||    
T  30508846 taaattaaaaacattaatcgatgtggcaattttaaatgttttgattgattgtgtgtgcaaagttgtt 30508780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 45273472 - 45273400
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgatt 298  Q
    |||| ||||||||||||||||||||||| |||||  || || |||||||||| |||||||||||||| |||||    
T  45273472 acaaccaatcaaaacattctgaattgctgcgtttagcctacataaattaaaatcattaattgatgtggcgatt 45273400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 24993313 - 24993364
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatta 314  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  24993313 ccacgtaaattaaaaacattaaatgatgtgacaattctaaatgtttttatta 24993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 35196743 - 35196793
Alignment:
Q  269 aaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgt 319  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  35196743 aaattaaaaacattaattgatgtgtcaattctaaatgttttgattggttgt 35196793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 7259826 - 7259777
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  7259826 cacgtaaattaaaaatattaattgatatgacaattctaaatgttttgatt 7259777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 26947190 - 26947250
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||| |||||||||||||| |||||| |||| |||||||| ||| ||||||||||    
T  26947190 taaattaaaatcattaattgatgtggcgattcaaaatattttgattggttatgtgtgcaaa 26947250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 43754899 - 43754796
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| |||||||||||||   |||||  | ||||||| ||| ||||||||||  ||||||||| ||||  ||||  |||||||||||| |||||||    
T  43754899 acacacaaccaatcaaaacatt---aattgtcatgtttgacacacataaattaaaataattaattgacgtgataattcagaatgttttgattggttgtgt 43754803  T
Q  322 gtgcaaa 328  Q
    |||||||    
T  43754802 gtgcaaa 43754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 4965172 - 4965122
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  4965172 ccacgtaaattaacaatattaattgatgtgacgattataaatattttgatt 4965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 26910753 - 26910688
Alignment:
Q  269 aaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||||||  |||| |||| |||||||||    
T  26910753 aaatttaaaacattaatcgatgtgacgattttaaatgtcttgattgattgtatgtgtaaagttgtt 26910688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 1914004 - 1913948
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    |||||||||||||| |||||||||||| ||| ||||| ||||||||  |||||||||    
T  1914004 taaattaaaaacataaattgatgtgacaattataaatattttgattgattgtgtgtg 1913948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 47006157 - 47006102
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttg 318  Q
    |||| |||||||||||||||| ||||| |||| ||||||||| |||||||| ||||    
T  47006157 ccacataaattaaaaacattagttgatatgacaattctaaatattttgattggttg 47006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 44434048 - 44434114
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||| ||| ||| ||||||| | ||||||||||||||||  |||||||||| || |||||    
T  44434048 taaattaaaaatatttattaatgtgacaactctaaatgttttgattgattgtgtgtgcgaaattgtt 44434114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 9516290 - 9516339
Alignment:
Q  282 taattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    ||||| ||||||  ||||||| |||||||||| |||||||||||||||||    
T  9516290 taattaatgtgataattctaagtgttttgattggttgtgtgtgcaaagtt 9516339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 26910767 - 26910800
Alignment:
Q  301 aaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||| |||||||||||||||||||    
T  26910767 aaatgttttgattacttgtgtgtgcaaagttgtt 26910800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 52741637 - 52741570
Alignment:
Q  267 gtaaattaaaaacatta---attgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    |||||||||||||||||   ||||| ||||  ||||||||||||||| || ||||| |||||||||||    
T  52741637 gtaaattaaaaacattattaattgacgtgataattctaaatgttttgtttggttgtatgtgcaaagtt 52741570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 16859314 - 16859258
Alignment:
Q  272 ttaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||||||| |  |||| |||||| ||||||||||||| ||||| ||||||||    
T  16859314 ttaaaaacattaactattgtggcgattcaaaatgttttgattggttgtttgtgcaaa 16859258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 13210237 - 13210341
Alignment:
Q  224 acacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgt 323  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||  |||||||||| || |||||  |||||||||||| ||||||||||    
T  13210237 acacaatcaatcaaaatattttgaattgccacgtttgacccacataaattaaaataattaattgatatggcgattgaaaatgttttgatcagttgtgtgt 13210336  T
Q  324 gcaaa 328  Q
    |||||    
T  13210337 gcaaa 13210341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 19636348 - 19636242
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| ||||||||| |||||| ||||  ||||||||||||| || |||||||  ||||||||||||  |||||||||||||||||||| |||||||    
T  19636348 acacacaaccaatcaaaatattctgcattgtcacgtttgacccacatagattaaaattattaattgatgtcgcgattctaaatgttttgattggttgtgt 19636249  T
Q  322 gtgcaaa 328  Q
     ||||||    
T  19636248 ttgcaaa 19636242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 19636510 - 19636439
Alignment:
Q  257 tttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  19636510 tttggcccacataaattaaaatcattaattgatgtggcgattctaaatgttttgattggttctgtgtgcaaa 19636439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 19248361 - 19248424
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaat 285  Q
    |||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |||||||    
T  19248361 acacacaatcaatcaaaatattctgaattgccacatttgacccacataaattaaaatcattaat 19248424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 18688966 - 18689020
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtg 322  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  18688966 taaattaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtg 18689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 6560257 - 6560318
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| |||  |||||||||    
T  6560257 ccacgtaaattaaaatcattaattgatgtgacgattctaaatattttaattgattgtgtgtg 6560318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 19254978 - 19255045
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||  ||||||||||||| | ||||| |||||||||||| |||||||||||||| |||||    
T  19254978 gtaaattaaaacaattaattgatgtggcaattctgaatgttttgattggttgtgtgtgcaaaattgtt 19255045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 26472677 - 26472728
Alignment:
Q  262 cccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  26472677 cccacgtaaattaaaaacattaagtgatgtgacaattcaaaatgttttgatt 26472728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 34707379 - 34707466
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    |||| ||||||||| ||||||||| || |||||||  |||  | |||||||| | ||||||||||||  |||||||||||||||||||    
T  34707379 acaaccaatcaaaatattctgaatcgccacgtttggtccatatgaattaaaatcgttaattgatgtggtgattctaaatgttttgatt 34707466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 12835572 - 12835534
Alignment:
Q  296 attctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12835572 attctaaatgttttgattaattgtgtgtgcaaagttgtt 12835534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 10663948 - 10663887
Alignment:
Q  273 taaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||| ||||||| | |||||||||||||||||| ||||| |||| | |||||||    
T  10663948 taaaaacattaaatgatgtggcaattctaaatgttttgattggttgtatgtgtatagttgtt 10663887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 7302671 - 7302727
Alignment:
Q  278 acattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||| ||||||  |||||||||||||||||||||||| ||| |||| |||||    
T  7302671 acattaattaatgtgataattctaaatgttttgattagttgtatgtccaaatttgtt 7302727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 26281103 - 26281152
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgat 312  Q
    |||||||||||| |||||||||| ||||||   |||||||||||||||||    
T  26281103 ccacgtaaattagaaacattaatcgatgtggtaattctaaatgttttgat 26281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 7302684 - 7302628
Alignment:
Q  278 acattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||| ||||  | |||||||||||||||| || ||||||||||||| |||||    
T  7302684 acattaattaatgtagcaattctaaatgttttgactaattgtgtgtgcaaaattgtt 7302628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 459144 - 459256
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    ||||||||||||||||||||||  |||| || || |||||||||||||||||||||| ||||||| ||| |  |||| ||||||||||||||  ||||||    
T  459144 acacacaatcaatcaaaacatttagaatcgccacttttgacccacgtaaattaaaaatattaattaatgcggtgattataaatgttttgattgattgtgt 459243  T
Q  322 gtgcaaagttgtt 334  Q
    || ||||||||||    
T  459244 gttcaaagttgtt 459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 34816626 - 34816732
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||||||||||||| ||| |||||||| | |||||| |||| |||||||||| |||||||||||||| | ||||  |||||||||||| ||||| |    
T  34816626 acacacaatcaatcaaaatattatgaattgccatgtttgatccacataaattaaaatcattaattgatgtggcaattcagaatgttttgattggttgtat 34816725  T
Q  322 gtgcaaa 328  Q
    |||||||    
T  34816726 gtgcaaa 34816732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 51460122 - 51460228
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| ||||||||| ||| ||||||||||| ||||| |||| |||||||||| |||||||||||||||| ||||  |||||||||||| ||| | |    
T  51460122 acacacaaccaatcaaaatattttgaattgctacatttgatccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttatat 51460221  T
Q  322 gtgcaaa 328  Q
    |||||||    
T  51460222 gtgcaaa 51460228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 38207315 - 38207383
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||||    
T  38207315 ccacataaattaaaaacattaattgatgtgacaattctaaatgtttttattggtcgtgtgtgcaaagtt 38207383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 42676990 - 42676918
Alignment:
Q  221 tacacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtga 293  Q
    ||||||||| ||||||||| |||||||||||| | |||||| ||||||||||||||| |||||||||||||||    
T  42676990 tacacacaaccaatcaaaatattctgaattgccatgtttgatccacgtaaattaaaatcattaattgatgtga 42676918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 5163977 - 5164046
Alignment:
Q  254 acgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgt 323  Q
    |||||||||| || |||||||||| |||||||| || |||||||| |||||||||||||| |||||||||    
T  5163977 acgtttgacctacttaaattaaaatcattaattaatatgacgattttaaatgttttgattggttgtgtgt 5164046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 37479452 - 37479392
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||||||||||||||||||| ||||||  || ||||||||| ||||||||||||||    
T  37479452 taaattaaaaacattaattgatgtggcgattcagaaagttttgattggttgtgtgtgcaaa 37479392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 35570647 - 35570578
Alignment:
Q  265 acgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||| ||||||||||||| | ||| |||||||||||||| |||||| ||| ||| |||||    
T  35570647 acgtaaattaaaaatattaattgatgtggcaattttaaatgttttgattggttgtgagtgtaaatttgtt 35570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 16106334 - 16106394
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||||||| |||| ||||| |||||| |||||||||||||  |||||||||||||    
T  16106334 taaattaaaaacataaattaatgtggcgattcgaaatgttttgattgattgtgtgtgcaaa 16106394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 21452821 - 21452775
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  21452821 gtaaattaaaaacattatttgatgtgacgattttaaatgttctgatt 21452775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 21457995 - 21457949
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  21457995 gtaaattaaaaacattatttgatgtgacgattttaaatgttctgatt 21457949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 35508418 - 35508484
Alignment:
Q  274 aaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttctaaac 340  Q
    |||| |||||||||||||||| ||||||| ||||||||||  |||||||| ||||||| || |||||    
T  35508418 aaaatcattaattgatgtgacaattctaattgttttgattgattgtgtgtacaaagttattttaaac 35508484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 49828206 - 49828252
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgtttt 309  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||    
T  49828206 ccacgtaaattaaaaacattaattcatatgacaattctaaatgtttt 49828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 27011962 - 27012015
Alignment:
Q  67 aaatatccaaataaaggaatgaaatctctattccattccgtttcattccactcc 120  Q
    |||||||||||| | |||||| |||||||||||||||||||| ||||| |||||    
T  27011962 aaatatccaaatgatggaatgtaatctctattccattccgttccattcaactcc 27012015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 52660010 - 52659950
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||||| | ||||||||||    
T  52660010 ccacgtaaattaaaa-cattaattgatgtagcaattctaaatgttttgagtggttgtgtgtg 52659950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 1815259 - 1815304
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||| ||||||| ||||| ||||||||||| ||||||||    
T  1815259 taaattaaaaatattaattaatgtggcgattctaaatattttgatt 1815304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 12010827 - 12010872
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgtttt 309  Q
    ||||||||||||||| ||||||| || |||| ||||||||||||||    
T  12010827 cacgtaaattaaaaatattaattcatatgacaattctaaatgtttt 12010872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 22989255 - 22989198
Alignment:
Q  271 attaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||||||||||| |||   ||| ||||||||||||||| |||||||| ||||    
T  22989255 attaaaaacattaattgacgtggtaattttaaatgttttgattaattgtgtgtacaaa 22989198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 35936756 - 35936696
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||||| |||||||||| ||   ||||||||| |||||||| ||||||| ||||||    
T  35936756 taaattaaaaatattaattgatttggtaattctaaatattttgatttgttgtgtatgcaaa 35936696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 25487506 - 25487608
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| ||||||||| ||| |||||||  |||||| |||||| |||||||||| |||||||||||||||| ||||  |||||||||||| |||||||    
T  25487506 acacacaaccaatcaaaatattatgaattgtaacgtttaacccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttgtgt 25487605  T
Q  322 gtg 324  Q
    |||    
T  25487606 gtg 25487608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 9280634 - 9280569
Alignment:
Q  269 aaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||| ||||||||||||||| ||| ||||||||| |||  ||||||||||||||||||||    
T  9280634 aaattaaaaatattaattgatgtgacaattttaaatgtttagataggttgtgtgtgcaaagttgtt 9280569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 12468888 - 12468959
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||| ||||||||||||||||||||||||  | ||| |||||||||| ||||||||| |||||||| |||||    
T  12468888 ccacttaaattaaaaacattaattgatgtatcaattttaaatgttttaattagttgtatgtgcaaaattgtt 12468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 10658667 - 10658618
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  10658667 cacgtaaattaaaaacattaattgttgtgatgaatctaaatgttttgatt 10658618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 24585605 - 24585658
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagtt 317  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||||||||    
T  24585605 cacgtaaattaaaaacattaattgatttagcaattctaaatgttttgattagtt 24585658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 2100956 - 2101000
Alignment:
Q  296 attctaaatgttttgattagttgtgtgtgcaaagttgttctaaac 340  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||    
T  2100956 attctaaatgatttgattggttgtgtgtgcaaagttgttttaaac 2101000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 35205461 - 35205531
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||| ||||||||||| ||   ||| |||||||||| ||| ||||| |||||||| |||||    
T  35205461 cacgtaaattaaaagcattaattgatatggtaattttaaatgttttaatttgttgtatgtgcaaaattgtt 35205531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 1576461 - 1576533
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttct 336  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||| ||||    
T  1576461 cacgtaaattaaaaacattatttgatgtgacgattataaatgttttgatcagttgtgtatgcaaagtttttct 1576533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 325
Target Start/End: Original strand, 19064256 - 19064359
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||| |||||||||||||||||||||||||  | ||||| ||||| ||||||||||  ||||||||||||| | ||||  |||||||||||| |||||||    
T  19064256 acacgcaatcaatcaaaacattctgaattgtcatgtttggcccacataaattaaaattattaattgatgtggcaattcagaatgttttgattggttgtgt 19064355  T
Q  322 gtgc 325  Q
    ||||    
T  19064356 gtgc 19064359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 16427867 - 16427799
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||||||||  |||||||| |||||||    
T  16427867 ccacgtaacttaaaaacattaattgatgtggcgattctaaatattttgattgattgtgtgtacaaagtt 16427799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 27002474 - 27002577
Alignment:
Q  225 cacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtg 324  Q
    ||||| ||||||||| |||||||||||| |||||||  |||  | |||||||| |||| |||||||||  |||||||||||||||||||  |||| ||||    
T  27002474 cacaaccaatcaaaatattctgaattgccacgtttggtccatatgaattaaaatcattcattgatgtggtgattctaaatgttttgattgattgtatgtg 27002573  T
Q  325 caaa 328  Q
    ||||    
T  27002574 caaa 27002577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 558
Target Start/End: Complemental strand, 35054438 - 35054306
Alignment:
Q  426 attgaaagtattgtccaggctgtcataaaaaagttgggtcataaattcttaggtacagctgatgaacttattggaatacaacctcaagtacaagcattag 525  Q
    ||||||| |||||| ||||  || |||||||  |||||||||||||||| |||    |||||||| |||||||  | ||||||||  ||| ||| |||||    
T  35054438 attgaaaatattgttcaggaggtgataaaaacattgggtcataaattctcagggtttgctgatgaccttattgcgacacaacctcgggtagaagaattag 35054339  T
Q  526 aatgtcttttaaaactaagttcagatgatgatg 558  Q
    || ||||||| ||| |||| |||||||||||||    
T  35054338 aaagtcttttgaaattaagctcagatgatgatg 35054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 8063015 - 8063122
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| |||| |||||||| | |||||| |||||||  |||| |||||||||| |||||||| | ||| | |||   |||||||||||| |||||||    
T  8063015 acacacaaacaattaaaacattttaaattgccacgtttggtccacataaattaaaatcattaatttacgtggcaatttagaatgttttgattggttgtgt 8063114  T
Q  322 gtgcaaag 329  Q
    ||| ||||    
T  8063115 gtgtaaag 8063122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 5760437 - 5760483
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  5760437 gtaaattaaaaacgttaattggtgtgacggttctaaatgttttgatt 5760483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12516713 - 12516659
Alignment:
Q  280 attaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||||||| ||| |||||||| ||||| ||||||| ||||||||||||    
T  12516713 attaattgatgtgacaattttaaatgttctgattggttgtgtatgcaaagttgtt 12516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 44247109 - 44247162
Alignment:
Q  67 aaatatccaaataaaggaatgaaatctctattccattccgtttcattccactcc 120  Q
    |||||||||||  | |||||| ||||||||||||||||||||||||||| ||||    
T  44247109 aaatatccaaacgatggaatgtaatctctattccattccgtttcattccgctcc 44247162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 328
Target Start/End: Complemental strand, 19427885 - 19427797
Alignment:
Q  238 aacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||| |||||||| | ||||| ||||  |||| ||||| |||||||||||||| | ||||  |||||||||||  ||||||||||||||    
T  19427885 aacattttgaattgccatgtttggccca--taaaataaaatcattaattgatgtggcaattcagaatgttttgatcggttgtgtgtgcaaa 19427797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 37141271 - 37141226
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttt 308  Q
    |||| |||||||||||||||||||||||||   |||||||||||||    
T  37141271 ccacataaattaaaaacattaattgatgtggaaattctaaatgttt 37141226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 20713684 - 20713628
Alignment:
Q  65 taaaatatccaaataaaggaatgaaatctctattccattccgtttcattccactcca 121  Q
    ||||||||||||| || |||||||||||  |||||||||||||| | ||||| ||||    
T  20713684 taaaatatccaaacaatggaatgaaatccatattccattccgttccgttccattcca 20713628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 42834186 - 42834218
Alignment:
Q  302 aatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||||||||||||||||||| |||||    
T  42834186 aatgttttgattagttgtgtgtgcaaaattgtt 42834218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 44558000 - 44558108
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgc 325  Q
    |||||||||||||||||| |||||||  | ||||   |||||| ||||||||| |||||||||||||||||||   |||||||| ||| |||||||||||    
T  44558000 acaatcaatcaaaacattatgaattgtcatgtttagtccacgttaattaaaaatattaattgatgtgacgatttagaatgttttaattggttgtgtgtgc 44558099  T
Q  326 aaagttgtt 334  Q
    |||||||||    
T  44558100 aaagttgtt 44558108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 11331045 - 11330939
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    ||||| || ||||||||||||||| |||||| || ||| |||||| |||||||||| ||||||||||| |||| |||| |||| ||||||||  ||||||    
T  11331045 acacataaccaatcaaaacattctaaattgccacatttaacccacataaattaaaatcattaattgatatgacaattcaaaatattttgattgattgtgt 11330946  T
Q  322 gtgcaaa 328  Q
     ||||||    
T  11330945 ctgcaaa 11330939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 11489066 - 11488960
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    ||||| || ||||||||||||||| |||||| || ||| |||||| |||||||||| ||||||||||| |||| |||| |||| ||||||||  ||||||    
T  11489066 acacataaccaatcaaaacattctaaattgccacatttaacccacataaattaaaatcattaattgatatgacaattcaaaatattttgattgattgtgt 11488967  T
Q  322 gtgcaaa 328  Q
     ||||||    
T  11488966 ctgcaaa 11488960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 21822997 - 21822933
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  21822997 gtaaattaaaaacattatttgatgtgatgattctaaatgttttgatcggttgtgtatgcaaagtt 21822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 24855115 - 24855227
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| |||||||||||||||||||||| | | |||  |||| ||| |||||| |||||||||||||||| |||   ||| |||||||| ||||| |    
T  24855115 acacacaaccaatcaaaacattctgaattgccatggttggtccacataagttaaaatcattaattgatgtgacaatttagaatattttgattggttgtat 24855214  T
Q  322 gtgcaaagttgtt 334  Q
    ||||||| |||||    
T  24855215 gtgcaaaattgtt 24855227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 5207705 - 5207598
Alignment:
Q  221 tacacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtg 320  Q
    |||| |||| |||||||||||||||||||||  || |||| | ||| |||||||||| |||||||||||||| | ||||  |||||||||||| |||||     
T  5207705 tacatacaaccaatcaaaacattctgaattgtcacatttggctcacataaattaaaatcattaattgatgtggcaattcagaatgttttgattggttgta 5207606  T
Q  321 tgtgcaaa 328  Q
    || |||||    
T  5207605 tgcgcaaa 5207598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 22771344 - 22771429
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaatt-aaaaacattaattgatgtgacgattctaaatgttttg 310  Q
    |||| |||||||||||||||||||||| | ||||||||||||| |||| ||||| ||||||||||||| | ||||  |||||||||    
T  22771344 acaaccaatcaaaacattctgaattgccatgtttgacccacgttaattaaaaaatattaattgatgtggcaattcagaatgttttg 22771429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 23077138 - 23077223
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaatt-aaaaacattaattgatgtgacgattctaaatgttttg 310  Q
    |||| |||||||||||||||||||||| | ||||||||||||| |||| ||||| ||||||||||||| | ||||  |||||||||    
T  23077138 acaaccaatcaaaacattctgaattgccatgtttgacccacgttaattaaaaaatattaattgatgtggcaattcagaatgttttg 23077223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 21781233 - 21781282
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgat 312  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  21781233 ccacgtaaattaaaaatattatttgatgttacgattctaaatgttttgat 21781282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 41910114 - 41910035
Alignment:
Q  249 ttgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||| |||||||  |||| |||||||||| |||||| ||||||||| |||| |||||||||||||  |||||||| ||||    
T  41910114 ttgccacgtttgggccacataaattaaaatcattaactgatgtgacaattcaaaatgttttgattgattgtgtgtccaaa 41910035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 42048531 - 42048468
Alignment:
Q  265 acgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||| ||||||||    
T  42048531 acgtaaatttaaaatattaattgatgtgactattctaaatgtcttgattgattgtatgtgcaaa 42048468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 36523717 - 36523775
Alignment:
Q  281 ttaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttctaaa 339  Q
    |||||||||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||    
T  36523717 ttaattgatgtgacaattctaaatattctgattcgttgtgtatgcaaagttgttttaaa 36523775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 16910106 - 16910041
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||| ||||||||||| ||||||| ||||||||||| ||||| ||||||||  ||||| |||||||    
T  16910106 ccacataaattaaaaatattaatttatgtgacgattataaatattttgattgattgtgcgtgcaaa 16910041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 24020053 - 24019993
Alignment:
Q  96 attccattccgtttcattccactccactctgtt-tgtttcatcaattcaaacggagcctaa 155  Q
    |||||||||||||||||||| |||| |||||||  ||| ||||||| ||||||||||||||    
T  24020053 attccattccgtttcattccgctccgctctgttacgttccatcaatccaaacggagcctaa 24019993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 40491199 - 40491139
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||||||||||| ||||| |||  ||| ||||| |||||||| ||||||||||||||    
T  40491199 taaattaaaaacattatttgatatgataattttaaatattttgattggttgtgtgtgcaaa 40491139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 50302649 - 50302579
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||||||||||||| |  ||||| ||||| |||| |||  |||| |||||||| |||||    
T  50302649 cacgtaaattaaaaacattaattgattttgcgattataaatatttttattgattgtatgtgcaaaattgtt 50302579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 10423046 - 10423095
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||||||||||    
T  10423046 cacgtaaattaaaattattaattgacgtggcaattctaaatgttttgatt 10423095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 7423301 - 7423357
Alignment:
Q  272 ttaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||| |||||||| ||||| ||||||  |||||||||||| ||||||||| ||||    
T  7423301 ttaaaatcattaattaatgtggcgattcagaatgttttgattggttgtgtgtacaaa 7423357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 30180465 - 30180409
Alignment:
Q  65 taaaatatccaaataaaggaatgaaatctctattccattccgtttcattccactcca 121  Q
    ||||||||||||| || |||||||||||  |||||||||||||| | ||||| ||||    
T  30180465 taaaatatccaaacaatggaatgaaatccatattccattccgttccgttccattcca 30180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 34738740 - 34738712
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtg 292  Q
    |||||||||||||||||||||||||||||    
T  34738740 cacgtaaattaaaaacattaattgatgtg 34738712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 47746790 - 47746850
Alignment:
Q  232 aatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtg 292  Q
    |||||||||||| |||||||  | |||| || ||| |||||||||| ||||||||||||||    
T  47746790 aatcaaaacattttgaattgtaatgtttaactcacataaattaaaatcattaattgatgtg 47746850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 12891552 - 12891469
Alignment:
Q  245 tgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    |||||||| | ||||| |||||||||| |||||||||||||| |||||  ||||| |||||||||||||||||||| |||||||    
T  12891552 tgaattgcaatgtttgtcccacgtaaactaaaaacattaattaatgtggtgattcaaaatgttttgattagttgtgcgtgcaaa 12891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 20895408 - 20895457
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgat 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20895408 ccacgtaaattaaaaacattatttgatgtgacgattctaaatgttttgat 20895457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 20906338 - 20906270
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||||  ||||||| |||||||||    
T  20906338 ccacgtaaattaaaaatattatttgaagtgacgattctaaatgttttgatcggttgtgtatgcaaagtt 20906270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 17540948 - 17541007
Alignment:
Q  269 aaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaa 328  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||    
T  17540948 aaattaaaaacatgaattgatgttgcgattctaagtgttttgattagttgtgtgtgcaaa 17541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 34873575 - 34873504
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||| |||  |||||| |||||| |||||    
T  34873575 ccacgtaaatttaaaacattaattgatgtgacgattttaaatgtttttattgattgtgtatgcaaatttgtt 34873504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 36880056 - 36879993
Alignment:
Q  271 attaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||    
T  36880056 attaaatacattaattgatatgaagattctaaatgttttgattagttgtgtgtgtaaaattgtt 36879993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 24229517 - 24229411
Alignment:
Q  222 acacacaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgt 321  Q
    |||||||| ||||||||||||| |||||| | | ||||  ||||| |||||||||| ||||||||||  |||| ||||  ||| |||||||| |||||||    
T  24229517 acacacaaccaatcaaaacattttgaattaccatgtttagcccacataaattaaaatcattaattgaaatgacaattcagaatattttgattggttgtgt 24229418  T
Q  322 gtgcaaa 328  Q
    |||||||    
T  24229417 gtgcaaa 24229411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 20919619 - 20919570
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgat 312  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  20919619 ccacgtaaattaaaaacattatttgatgtgacgattctaaatattttgat 20919570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 29048622 - 29048686
Alignment:
Q  270 aattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||| ||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| |||||    
T  29048622 aattgaaaacattaattgatgtgatgattataaatattttgattggttgtgtgtgcaaaattgtt 29048686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 37866979 - 37866908
Alignment:
Q  264 cacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttc 335  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||||||| || | |||| ||| ||||||    
T  37866979 cacgtaaattaaaaacattaattcatgtgacaattctaaatattttgattaattatatgtgtaaaattgttc 37866908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 32746350 - 32746423
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgttctaaac 340  Q
    |||||||||||| |||||||||||||   ||| |||||||||||||| ||||||||| |||| ||||| |||||    
T  32746350 gtaaattaaaaatattaattgatgtggaaattataaatgttttgattggttgtgtgtacaaaattgttttaaac 32746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 9035348 - 9035456
Alignment:
Q  226 acaatcaatcaaaacattctgaattgctacgtttgacccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgc 325  Q
    |||||||||||||||||||| ||| |  | ||||| | ||| |||||||||| |||||||||||||| | ||||  ||  |||||||| ||| |||||||    
T  9035348 acaatcaatcaaaacattctcaatagtcatgtttggcacacataaattaaaatcattaattgatgtggcaattcataaaattttgattggttatgtgtgc 9035447  T
Q  326 aaagttgtt 334  Q
    ||| |||||    
T  9035448 aaaattgtt 9035456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 42519486 - 42519524
Alignment:
Q  296 attctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  42519486 attctaaatgttttgatttgttgtgtgtgcaaagttgtt 42519524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 4799649 - 4799720
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||| ||||||||||| ||||| | || | || ||| |||||||||||||||||||| |||||||| |||||    
T  4799649 ccacataaattaaaaatattaactaatataaccattttaaatgttttgattagttgtatgtgcaaaattgtt 4799720  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 9474899 - 9474857
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttg 310  Q
    ||||||||||| |||||| |||||||||||| |||||||||||    
T  9474899 taaattaaaaatattaatcgatgtgacgattttaaatgttttg 9474857  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 29814110 - 29814068
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgtttt 309  Q
    |||||||||||| |||||| |||||||||||||||||| ||||    
T  29814110 gtaaattaaaaatattaatcgatgtgacgattctaaatatttt 29814068  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 35503607 - 35503541
Alignment:
Q  268 taaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||||||| ||||||||||||   |||| ||||||||||||||  || |||||||||| |||||    
T  35503607 taaattaaaaatattaattgatgtattgattttaaatgttttgattgattctgtgtgcaaaattgtt 35503541  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 32746337 - 32746305
Alignment:
Q  302 aatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    |||||||||||||||||| ||||||||||||||    
T  32746337 aatgttttgattagttgtatgtgcaaagttgtt 32746305  T

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Target: scaffold0265 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 9812 - 9876
Alignment:
Q  267 gtaaattaaaaacattaattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagtt 331  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  9812 gtaaattaaaaacattatttgatgtgatgattctaaatgttttgatcggttgtgtatgcaaagtt 9876  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 63666 - 63620
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgtttt 309  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  63666 ccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 63620  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 134966 - 135012
Alignment:
Q  263 ccacgtaaattaaaaacattaattgatgtgacgattctaaatgtttt 309  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  134966 ccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 135012  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 427636 - 427594
Alignment:
Q  271 attaaaaacattaattgatgtgacgattctaaatgttttgatt 313  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  427636 attaaaaacattaattgatgtgacaattttaaatgttttgatt 427594  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 427639 - 427685
Alignment:
Q  288 atgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  427639 atgtgacaattctgaatattttgattagttgtgtgtgcaaagttgtt 427685  T

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Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 412234 - 412285
Alignment:
Q  282 taattgatgtgacgattctaaatgttttgattagttgtgtgtgcaaagttgtt 334  Q
    ||||| ||||||| ||||||||||||| |||||||||||||| |||| |||||    
T  412234 taatttatgtgacaattctaaatgttt-gattagttgtgtgtacaaaattgtt 412285  T

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