View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_301 (Length: 205)
Name: NF1498_high_301
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_301 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31468291 - 31468098
Alignment:
| Q |
1 |
gaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtctcttctcactaacaaggctatt |
100 |
Q |
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| T |
31468291 |
gaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtctcttctcactaacaaggctatt |
31468192 |
T |
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| Q |
101 |
ggacttgtcgggaaacttgttgagtggtagtctactacaagaagtaggcaggctagaaaatatcggaaagttgaatttttctgagaataatcta |
194 |
Q |
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| T |
31468191 |
ggacttgtcgggaaacttgttgagtggtagtctactacaagaagtaggcaggctagaaaatatcggaaagttgaatttttctgagaataatcta |
31468098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 10653304 - 10653236
Alignment:
| Q |
25 |
tagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtctcttctcactaacaa |
93 |
Q |
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| T |
10653304 |
tagacctttcacaaaacattctccgaggaaccatacccatagaggttttaagtctttcctccctaacaa |
10653236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7192085 - 7192163
Alignment:
| Q |
1 |
gaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtct |
79 |
Q |
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|||||||| |||||||| | || | |||||| | |||||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
7192085 |
gaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaggaaccatacccttagaagttttcagtct |
7192163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 10661190 - 10661136
Alignment:
| Q |
25 |
tagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtct |
79 |
Q |
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|||||||||| ||||||| |||||||||||||||||| | | |||| |||||||| |
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| T |
10661190 |
tagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtct |
10661136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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