View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_32 (Length: 566)

Name: NF1498_high_32
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_32
NF1498_high_32
[»] chr6 (27 HSPs)
chr6 (18-566)||(23391777-23392325)
chr6 (452-566)||(23397359-23397473)
chr6 (451-566)||(2687929-2688044)
chr6 (451-566)||(17839144-17839259)
chr6 (452-566)||(18346755-18346869)
chr6 (453-566)||(29380189-29380302)
chr6 (453-565)||(6701378-6701490)
chr6 (451-566)||(32507031-32507146)
chr6 (451-566)||(5187627-5187742)
chr6 (453-566)||(6702876-6702988)
chr6 (456-565)||(29722664-29722773)
chr6 (448-566)||(5186561-5186679)
chr6 (467-566)||(2687242-2687341)
chr6 (448-566)||(17837609-17837727)
chr6 (451-543)||(12256612-12256704)
chr6 (451-566)||(29381735-29381850)
chr6 (453-566)||(232174-232285)
chr6 (461-518)||(12256557-12256614)
chr6 (452-520)||(233615-233683)
chr6 (451-519)||(7308499-7308567)
chr6 (452-520)||(15730081-15730149)
chr6 (452-519)||(6452563-6452630)
chr6 (452-519)||(34023883-34023950)
chr6 (481-519)||(34024116-34024154)
chr6 (481-566)||(6452310-6452395)
chr6 (469-518)||(7311777-7311826)
chr6 (491-520)||(27082195-27082224)
[»] chr2 (37 HSPs)
chr2 (448-566)||(18617011-18617129)
chr2 (451-566)||(29219381-29219496)
chr2 (451-566)||(29332680-29332795)
chr2 (454-565)||(34468957-34469068)
chr2 (448-566)||(1082981-1083099)
chr2 (453-566)||(29220881-29220994)
chr2 (453-566)||(29334180-29334293)
chr2 (449-566)||(18615510-18615627)
chr2 (451-566)||(6030601-6030716)
chr2 (453-566)||(6032319-6032432)
chr2 (448-564)||(44192453-44192569)
chr2 (453-566)||(44191134-44191247)
chr2 (453-565)||(1085394-1085504)
chr2 (451-566)||(12359684-12359799)
chr2 (448-522)||(249017-249091)
chr2 (453-519)||(35903506-35903572)
chr2 (468-519)||(11315946-11315997)
chr2 (453-564)||(17459251-17459362)
chr2 (472-519)||(43033099-43033146)
chr2 (481-519)||(7437813-7437851)
chr2 (468-533)||(21664816-21664881)
chr2 (452-505)||(35061381-35061434)
chr2 (467-519)||(37956961-37957013)
chr2 (452-507)||(102420-102475)
chr2 (480-519)||(17460736-17460775)
chr2 (448-519)||(32470627-32470698)
chr2 (456-522)||(271824-271890)
chr2 (481-519)||(11317420-11317458)
chr2 (469-519)||(28561382-28561432)
chr2 (481-519)||(32469174-32469212)
chr2 (449-519)||(34147130-34147200)
chr2 (449-515)||(37956912-37956978)
chr2 (466-519)||(34512825-34512878)
chr2 (450-519)||(34513605-34513674)
chr2 (443-519)||(28562861-28562937)
chr2 (455-535)||(33995948-33996027)
chr2 (471-519)||(36010593-36010641)
[»] chr1 (26 HSPs)
chr1 (449-565)||(15232746-15232862)
chr1 (448-566)||(15234046-15234164)
chr1 (448-566)||(49801610-49801728)
chr1 (450-566)||(49802900-49803016)
chr1 (452-564)||(16963831-16963943)
chr1 (470-535)||(16965163-16965228)
chr1 (468-564)||(51042350-51042445)
chr1 (452-520)||(52627512-52627580)
chr1 (452-519)||(14470853-14470920)
chr1 (480-519)||(15072842-15072881)
chr1 (451-566)||(24499660-24499775)
chr1 (452-519)||(42245939-42246006)
chr1 (448-519)||(46111540-46111611)
chr1 (449-519)||(15746818-15746888)
chr1 (453-519)||(42244629-42244695)
chr1 (453-519)||(52628925-52628991)
chr1 (450-566)||(15071337-15071453)
chr1 (471-519)||(34352008-34352056)
chr1 (448-520)||(41874022-41874094)
chr1 (451-519)||(46318669-46318737)
chr1 (452-507)||(20064173-20064228)
chr1 (480-519)||(44278401-44278440)
chr1 (452-519)||(46467143-46467210)
chr1 (481-519)||(45585061-45585099)
chr1 (481-566)||(14477796-14477881)
chr1 (481-566)||(16123313-16123398)
[»] chr4 (45 HSPs)
chr4 (451-564)||(33231385-33231498)
chr4 (451-566)||(10168788-10168903)
chr4 (449-566)||(7707582-7707699)
chr4 (448-566)||(7708793-7708913)
chr4 (450-566)||(50546901-50547017)
chr4 (448-565)||(54866637-54866753)
chr4 (452-566)||(23201843-23201957)
chr4 (453-566)||(23203958-23204071)
chr4 (450-566)||(10167420-10167536)
chr4 (452-565)||(4714016-4714130)
chr4 (453-566)||(13165494-13165606)
chr4 (456-566)||(50548228-50548334)
chr4 (467-565)||(54865117-54865214)
chr4 (483-565)||(33232703-33232785)
chr4 (457-566)||(53204363-53204472)
chr4 (452-519)||(52241207-52241274)
chr4 (449-519)||(6348149-6348219)
chr4 (481-566)||(393643-393728)
chr4 (450-519)||(1588141-1588210)
chr4 (450-519)||(2310918-2310987)
chr4 (452-565)||(2312488-2312601)
chr4 (481-566)||(4871369-4871454)
chr4 (468-565)||(44501531-44501628)
chr4 (481-566)||(53205488-53205573)
chr4 (468-519)||(390230-390281)
chr4 (452-519)||(1831315-1831382)
chr4 (464-519)||(53435805-53435860)
chr4 (468-566)||(1190197-1190295)
chr4 (481-519)||(1829779-1829817)
chr4 (481-519)||(4129019-4129057)
chr4 (481-519)||(6349605-6349643)
chr4 (481-519)||(27850984-27851022)
chr4 (453-519)||(53432060-53432126)
chr4 (451-519)||(11968507-11968575)
chr4 (453-505)||(13531143-13531195)
chr4 (451-519)||(24426335-24426403)
chr4 (481-565)||(37882860-37882944)
chr4 (471-519)||(42810255-42810303)
chr4 (480-519)||(40792776-40792815)
chr4 (452-519)||(54485597-54485664)
chr4 (481-519)||(1188869-1188907)
chr4 (481-519)||(27847704-27847742)
chr4 (452-566)||(31968397-31968511)
chr4 (480-566)||(42871120-42871206)
chr4 (456-518)||(52963570-52963632)
[»] chr5 (26 HSPs)
chr5 (449-565)||(30910735-30910851)
chr5 (451-566)||(33173965-33174080)
chr5 (453-566)||(30912167-30912280)
chr5 (449-566)||(22308804-22308921)
chr5 (448-566)||(22307501-22307619)
chr5 (452-519)||(22047729-22047796)
chr5 (451-548)||(1010387-1010484)
chr5 (455-548)||(8521255-8521348)
chr5 (452-519)||(8523798-8523865)
chr5 (453-519)||(9169584-9169650)
chr5 (481-562)||(30859181-30859262)
chr5 (452-519)||(325237-325304)
chr5 (450-520)||(34899002-34899072)
chr5 (480-519)||(39605521-39605560)
chr5 (450-520)||(34894144-34894214)
chr5 (467-520)||(20538065-20538118)
chr5 (481-566)||(22049141-22049226)
chr5 (451-519)||(10978331-10978399)
chr5 (480-519)||(30857825-30857864)
chr5 (453-519)||(1009182-1009248)
chr5 (481-519)||(39603879-39603917)
chr5 (466-535)||(11846307-11846376)
chr5 (441-505)||(1273072-1273136)
chr5 (450-518)||(20539398-20539466)
chr5 (506-566)||(33172604-33172664)
chr5 (454-514)||(41798004-41798064)
[»] chr8 (33 HSPs)
chr8 (452-566)||(13117638-13117752)
chr8 (452-565)||(17338038-17338151)
chr8 (451-566)||(13116326-13116441)
chr8 (450-566)||(42098558-42098674)
chr8 (452-566)||(17339554-17339668)
chr8 (450-562)||(42100115-42100227)
chr8 (454-566)||(211594-211706)
chr8 (454-566)||(240550-240662)
chr8 (454-566)||(725217-725329)
chr8 (454-566)||(793905-794017)
chr8 (449-565)||(28418800-28418916)
chr8 (448-566)||(26696525-26696643)
chr8 (453-519)||(32797136-32797202)
chr8 (469-566)||(8570132-8570229)
chr8 (481-565)||(6397809-6397893)
chr8 (481-566)||(22551033-22551117)
chr8 (451-519)||(38697058-38697126)
chr8 (452-519)||(28420226-28420293)
chr8 (448-519)||(32798584-32798655)
chr8 (452-519)||(41743667-41743734)
chr8 (452-507)||(42878880-42878935)
chr8 (460-519)||(45394972-45395031)
chr8 (452-519)||(45437534-45437601)
chr8 (481-519)||(42870839-42870877)
chr8 (450-519)||(42877614-42877683)
chr8 (481-566)||(45281194-45281278)
chr8 (481-565)||(212718-212802)
chr8 (481-565)||(239452-239536)
chr8 (481-565)||(726341-726425)
chr8 (481-565)||(792807-792891)
chr8 (481-565)||(798842-798926)
chr8 (451-519)||(32695327-32695395)
chr8 (480-519)||(32693855-32693894)
[»] chr7 (47 HSPs)
chr7 (453-566)||(22335977-22336090)
chr7 (452-566)||(13564244-13564358)
chr7 (453-565)||(22538854-22538966)
chr7 (451-566)||(13562818-13562933)
chr7 (455-566)||(11501180-11501291)
chr7 (448-566)||(3413525-3413643)
chr7 (448-566)||(22537552-22537670)
chr7 (453-566)||(3414839-3414952)
chr7 (452-566)||(11502427-11502541)
chr7 (452-523)||(22337418-22337489)
chr7 (453-566)||(40738843-40738957)
chr7 (453-519)||(40812665-40812731)
chr7 (448-566)||(24844254-24844372)
chr7 (467-522)||(24844399-24844454)
chr7 (481-565)||(4300054-4300138)
chr7 (456-520)||(24281075-24281139)
chr7 (451-519)||(38539667-38539735)
chr7 (472-535)||(534102-534165)
chr7 (472-535)||(537331-537394)
chr7 (451-566)||(45454034-45454149)
chr7 (469-519)||(45455424-45455474)
chr7 (449-565)||(32602927-32603043)
chr7 (448-520)||(41078749-41078821)
chr7 (481-565)||(43459481-43459565)
chr7 (490-566)||(43460828-43460904)
chr7 (450-565)||(4298708-4298823)
chr7 (449-512)||(22039123-22039186)
chr7 (464-519)||(25533197-25533252)
chr7 (468-519)||(30333298-30333349)
chr7 (452-519)||(47456427-47456494)
chr7 (481-519)||(11344533-11344571)
chr7 (481-519)||(22115216-22115254)
chr7 (453-519)||(30334689-30334755)
chr7 (453-519)||(32254987-32255053)
chr7 (481-519)||(40509786-40509824)
chr7 (453-505)||(9660119-9660171)
chr7 (471-519)||(30310137-30310185)
chr7 (451-535)||(33779120-33779204)
chr7 (448-520)||(35664332-35664404)
chr7 (481-564)||(32256402-32256485)
chr7 (448-519)||(47059101-47059172)
chr7 (448-519)||(47454330-47454401)
chr7 (481-519)||(30311521-30311559)
chr7 (481-519)||(40508404-40508442)
chr7 (481-566)||(24282981-24283065)
chr7 (449-566)||(33096863-33096980)
chr7 (447-507)||(35157-35217)
[»] chr3 (40 HSPs)
chr3 (451-561)||(35370909-35371019)
chr3 (452-566)||(53614278-53614392)
chr3 (451-566)||(27837916-27838031)
chr3 (441-564)||(26887562-26887685)
chr3 (448-566)||(35372163-35372284)
chr3 (453-565)||(41264659-41264771)
chr3 (452-566)||(26886269-26886383)
chr3 (448-566)||(53612864-53612982)
chr3 (453-564)||(10732136-10732247)
chr3 (448-566)||(10730878-10730996)
chr3 (451-566)||(41263634-41263749)
chr3 (450-565)||(42686151-42686266)
chr3 (481-565)||(18458663-18458747)
chr3 (471-563)||(37736089-37736181)
chr3 (450-565)||(50809416-50809531)
chr3 (450-565)||(50866331-50866446)
chr3 (453-519)||(3817315-3817381)
chr3 (480-565)||(36176512-36176598)
chr3 (481-566)||(53194875-53194960)
chr3 (451-519)||(40244183-40244251)
chr3 (453-519)||(3811525-3811591)
chr3 (480-566)||(34818111-34818197)
chr3 (451-565)||(50810840-50810954)
chr3 (451-565)||(50864910-50865024)
chr3 (448-565)||(37735299-37735416)
chr3 (481-519)||(18442278-18442316)
chr3 (481-519)||(19487352-19487390)
chr3 (480-566)||(53421766-53421852)
chr3 (481-566)||(38242521-38242606)
chr3 (451-519)||(3455677-3455745)
chr3 (471-519)||(12108035-12108083)
chr3 (452-519)||(38240903-38240970)
chr3 (464-519)||(43174758-43174813)
chr3 (469-519)||(3209983-3210033)
chr3 (481-519)||(18197173-18197211)
chr3 (481-519)||(53420342-53420380)
chr3 (481-566)||(40364345-40364430)
chr3 (481-566)||(42684902-42684987)
chr3 (480-545)||(55328331-55328396)
chr3 (438-506)||(8371200-8371268)
[»] scaffold0019 (2 HSPs)
scaffold0019 (448-566)||(63136-63254)
scaffold0019 (450-565)||(61846-61961)
[»] scaffold0472 (1 HSPs)
scaffold0472 (456-523)||(791-858)
[»] scaffold0034 (1 HSPs)
scaffold0034 (469-566)||(109750-109847)
[»] scaffold1152 (1 HSPs)
scaffold1152 (452-520)||(2527-2594)
[»] scaffold0078 (1 HSPs)
scaffold0078 (481-566)||(18838-18923)
[»] scaffold0031 (2 HSPs)
scaffold0031 (481-566)||(123995-124080)
scaffold0031 (481-519)||(125285-125323)
[»] scaffold0011 (2 HSPs)
scaffold0011 (450-519)||(127428-127497)
scaffold0011 (450-505)||(128657-128712)
[»] scaffold0077 (2 HSPs)
scaffold0077 (449-565)||(54191-54307)
scaffold0077 (480-566)||(52617-52703)
[»] scaffold1251 (1 HSPs)
scaffold1251 (449-519)||(1137-1207)
[»] scaffold2071 (1 HSPs)
scaffold2071 (453-519)||(733-799)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 23391777 - 23392325
Alignment:
Q  18 agtttgtcatagagtaaagaggttgaaattttggtgttgagatttaagaaaaccaagagaaaggtggtatatttataaggaagcatagtttgaaggaaaa 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391777 agtttgttatagagtaaagaggttgaaattttggtgttgagatttaagaaaaccaagagaaaggtggtatatttataaggaagcatagtttgaaggaaaa 23391876  T
Q  118 attaagtaaacagttaaacnnnnnnnnnnnnnnnnnnnnnnnagagaattggatatttcagaagtttgaaagccaggtggttggctatagaggattggtt 217  Q
    || ||||||||||||||||                       ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  23391877 atgaagtaaacagttaaactgtgagtgtgtgtgttttgtgtgagagaattggatatttcagaagttgagaagccaggtggttggctatagaggattggtt 23391976  T
Q  218 atgaattattttgaaagaaaaagggaactgatgatgagagaagagacaagaaaatataaagtatgcgtgttttttgagggtcaccacaccagacccaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391977 atgaattattttgaaagaaaaagggaactgatgatgagagaagagacaagaaaatataaagtatgcgtgttttttgagggtcaccacaccagacccaaaa 23392076  T
Q  318 gagtaataatgttctcaaaaatatcttcaaagacactatataatgttttgttttccgacgacttattctaaataaggtaattaaacggttagcgaatgac 417  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23392077 gagtaataatgttctcaaaaatatcttcaaagacgctatataatgttttgttttccgacgacttattctaaataaggtaattaaacggttaacgaatgac 23392176  T
Q  418 agggatatgctatttttagcttttaattccttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataa 517  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23392177 agggatatgctattttaagcttttaattccttttaggcttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataa 23392276  T
Q  518 aaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||| |||| |||||| |||||||| |||  ||||||||||||||||    
T  23392277 aaatggcgtttaagtccctcaccttttcctccgtttgccaaataaatcc 23392325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 23397473 - 23397359
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||  |    
T  23397473 aggcttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgt 23397374  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  23397373 ttgccaaataaatcc 23397359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 2688044 - 2687929
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||      
T  2688044 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaatggcgttttagtccctcacctttttatccg 2687945  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  2687944 tttgccaaataaatcc 2687929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 17839259 - 17839144
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||      
T  17839259 taggcttattagatcgtttggtcccttatttaatttcttgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 17839160  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  17839159 tttgccaaataaatcc 17839144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 18346869 - 18346755
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||| ||| ||| ||||| |    
T  18346869 aggcttattagatcatttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggcgttttgatccctcacgtttgtctctgt 18346770  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  18346769 ttgccaaataaatcc 18346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 29380189 - 29380302
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||  ||  ||    
T  29380189 ggcttattagatcatttggtcccttatttaatttcttgttttcattttggtcccacaattaacaaaaatggcgttttagtccctcaccttttcttccgtt 29380288  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  29380289 tgccaaataaatcc 29380302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 453 - 565
Target Start/End: Original strand, 6701378 - 6701490
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |||  ||    
T  6701378 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggtattttagtccctcacattttcctccgtt 6701477  T
Q  553 tgccaaataaatc 565  Q
    |||||||||||||    
T  6701478 tgccaaataaatc 6701490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 32507146 - 32507031
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||      
T  32507146 taggcttattagattgtttggtcacttatttaatttcatgttttcattttgatcccacatttaataaaaatggtgttttagtccctcacatttttctcag 32507047  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  32507046 tttgccaaataaatcc 32507031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 5187742 - 5187627
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||  |||||||| ||      
T  5187742 taggcttattagattgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagttccttacctttttgtccg 5187643  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  5187642 tttgccaaataaatcc 5187627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 6702988 - 6702876
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||| |||| |||  ||    
T  6702988 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggcgtttta-tccctcacgttttcctccgtt 6702890  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  6702889 tgccaaataaatcc 6702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 456 - 565
Target Start/End: Original strand, 29722664 - 29722773
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgc 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||| |||| ||| ||||      
T  29722664 ttattagatcatttggtcccttatttaatttcatgttttcattttgatcccataattaataaaaatggcgttttagtccctcacattttcctccattttg 29722763  T
Q  556 caaataaatc 565  Q
    ||||||||||    
T  29722764 caaataaatc 29722773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 5186561 - 5186679
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||  |||||| |||  || ||||| ||    
T  5186561 ttttaggcttattagatcatttgatcccttatttaatttcatgttttcattttggtcacacaattaataaaagtgacgttttaatccatcatcttttcct 5186660  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  5186661 ccgtttgccaaataaatcc 5186679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 467 - 566
Target Start/End: Original strand, 2687242 - 2687341
Alignment:
Q  467 tttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||| |||  ||||||||||||||||    
T  2687242 tttggtcccttatttaatttcatgttttcattttgatcccacaattaataaaaatggcgttttagtccttcacattttcctccgtttgccaaataaatcc 2687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 17837609 - 17837727
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||  |    
T  17837609 tttttggcttattagatcgtttggtcccttatttaatttattgttttcattttggttccacaattaataaaaatggcgttttagtccctcatcttttctt 17837708  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||| ||||||||||||    
T  17837709 ccgtttaccaaataaatcc 17837727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 543
Target Start/End: Complemental strand, 12256704 - 12256612
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacaccttt 543  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||| |||||||    
T  12256704 taggcttattagattgtttggtcccttatttaatttcatgttttcgttttggtcgcacaattaataaaaatagcgttttagtccctcaccttt 12256612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 29381850 - 29381735
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||  ||||||||||  || ||||| |||      
T  29381850 taggcttattagatcgtttggtcccttatttaatttcttattttcattttgatcccacaattaataaaaatgacgttttagtccttcatcttttcctccg 29381751  T
Q  551 tttgccaaataaatcc 566  Q
    ||| ||||||||||||    
T  29381750 tttaccaaataaatcc 29381735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 232174 - 232285
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    |||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||| |||| |||  ||    
T  232174 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaa--cacgttttagtccctcactttttcctccgtt 232271  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  232272 tgccaaataaatcc 232285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 518
Target Start/End: Original strand, 12256557 - 12256614
Alignment:
Q  461 agatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaa 518  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||| | ||||||||||    
T  12256557 agatcgtttggtcccttatttaatttcatatttttattttggtcctaaaattaataaa 12256614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 233683 - 233615
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||| ||||||| ||||||| |||  ||||||||  ||||||||||||||||| ||||||||||||    
T  233683 aggcttaatagatcaattggtcctttaaataatttcaatttttcattttggtcccataattaataaaaa 233615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 7308567 - 7308499
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||| | || ||||||||    
T  7308567 taggcttaataggtcatttggccccttaattaatttcaagttttcattttggtcctataagtaataaaa 7308499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 15730149 - 15730081
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    |||||||||||||   ||||||||| | ||||||||   ||||||||||||||||||||||||||||||    
T  15730149 aggcttattagattcattggtccctcaattaatttccatttttcattttggtcccacaattaataaaaa 15730081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 6452630 - 6452563
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||  |||||||| ||  |||||||| |||||||||||||||||| |||||||||||    
T  6452630 aggcttatttgatccattggtcccctaaataatttcaagttttcattttggtcccataattaataaaa 6452563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 34023883 - 34023950
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| |||||  |||||||| |  |||||| | |||||||||||||| |||||||||||||||    
T  34023883 aggcttatttgatcaaatggtccctcaaataattttaagttttcattttggtaccacaattaataaaa 34023950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 34024154 - 34024116
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  34024154 taatttcaaattttcattttggtcccacaattaataaaa 34024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 6452310 - 6452395
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||| ||||||||| | |||||||||||     ||||||||||| ||| |||| |||  ||||||||||||||||    
T  6452310 taatttcaagttttcgttttggtcctataattaataaaaggtacgttttagtccctcactttttcctccgtttgccaaataaatcc 6452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 7311826 - 7311777
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaa 518  Q
    ||||||||||  |||||| | |||||||||||| ||||||||||||||||    
T  7311826 tggtcccttaaataattttaagttttcattttgatcccacaattaataaa 7311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Complemental strand, 27082224 - 27082195
Alignment:
Q  491 ttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||||||||||||||||    
T  27082224 ttttcattttggtcccacaattaataaaaa 27082195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 18617129 - 18617011
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||    
T  18617129 ttttaggcttattagatcatttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcct 18617030  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  18617029 ccgtttgccaaataaatcc 18617011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 29219381 - 29219496
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||      
T  29219381 taggcttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 29219480  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  29219481 tttgccaaataaatcc 29219496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 29332680 - 29332795
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||      
T  29332680 taggcttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 29332779  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  29332780 tttgccaaataaatcc 29332795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 565
Target Start/End: Original strand, 34468957 - 34469068
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctattt 553  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| ||| ||||  ||| |||    
T  34468957 gcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcgcacaattaataaaaatgacgttttagtccctcacattttcttctgttt 34469056  T
Q  554 gccaaataaatc 565  Q
    ||||||||||||    
T  34469057 gccaaataaatc 34469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 1082981 - 1083099
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||  || ||||||||    
T  1082981 ttttaggcttattatatcgtttggtcccttatttaatttcatattttcattttggtcccacatttaataaaaatggtgttttggtccgtcatctttttct 1083080  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  |||||||| |||||||    
T  1083081 ccgtttgccaattaaatcc 1083099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 29220994 - 29220881
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  || |||| |||| ||    
T  29220994 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtt 29220895  T
Q  553 tgccaaataaatcc 566  Q
    |||||||| |||||    
T  29220894 tgccaaattaatcc 29220881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 29334293 - 29334180
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  || |||| |||| ||    
T  29334293 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtt 29334194  T
Q  553 tgccaaataaatcc 566  Q
    |||||||| |||||    
T  29334193 tgccaaattaatcc 29334180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 449 - 566
Target Start/End: Original strand, 18615510 - 18615627
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||||  || |||| |||    
T  18615510 tttatgcttattagatcgtttggtcccttatttaatttcatattttcattttggtctcacaattaataaaaatggctttttagtcccctacattttcctc 18615609  T
Q  549 tatttgccaaataaatcc 566  Q
      ||||||||||||||||    
T  18615610 cgtttgccaaataaatcc 18615627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 6030601 - 6030716
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||  |  |||| |||      
T  6030601 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaattggcgttttagttccttattttttcctccg 6030700  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  6030701 tttgccaaataaatcc 6030716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 6032432 - 6032319
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| |||| ||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||  |  |||| |||| ||    
T  6032432 ggcttattagatcgtttgatcctttattcaatttcatgtttttattttggttccacaattaataaaaatggtgttttagtcccgtattttttcctctgtt 6032333  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  6032332 tgccaaataaatcc 6032319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 448 - 564
Target Start/End: Complemental strand, 44192569 - 44192453
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| ||| |||| ||    
T  44192569 ttttcggcttattagattgtttggtcccttatttaatttcatgttttcattttgatcccaaaattaataaaaatggcattttagtccctcacattttcct 44192470  T
Q  548 ctatttgccaaataaat 564  Q
    |  |||| |||||||||    
T  44192469 ccgtttgtcaaataaat 44192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 44191134 - 44191247
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||||||||| || | ||| | || ||    
T  44191134 ggcttataagattatttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaattgcattttagtccctcatcgtttccactgtt 44191233  T
Q  553 tgccaaataaatcc 566  Q
    || |||||||||||    
T  44191234 tgtcaaataaatcc 44191247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 565
Target Start/End: Complemental strand, 1085504 - 1085394
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||| ||  |||| |||  ||    
T  1085504 ggcttattagattgtttggtcccttatttaatttcatgttttcattttggtaccacatttaataaaattggcgttttggtccctca--ttttcctccgtt 1085407  T
Q  553 tgccaaataaatc 565  Q
    |||||||||||||    
T  1085406 tgccaaataaatc 1085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 12359799 - 12359684
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||||  | ||||||||  ||||||||||||||| |||| |||||||||||||||||| ||| ||||| ||||| ||  |||| || |     
T  12359799 taggcttattagatcaccttgtcccttaaataatttcatgttttcgttttagtcccacaattaataaaattggcgttttggtccctcattttttcctttg 12359700  T
Q  551 tttgccaaataaatcc 566  Q
    || |||||||||||||    
T  12359699 ttcgccaaataaatcc 12359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 249017 - 249091
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatg 522  Q
    |||| ||||||||||||||||||||||||||  | ||||| | ||||||||||||||||| | ||||||||||||    
T  249017 tttttggcttattagatcatttggtcccttaagttatttcttattttcattttggtcccatatttaataaaaatg 249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 35903506 - 35903572
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| ||||||||||| ||| ||||||||| |||||||||||||||||| || ||||||||    
T  35903506 ggcttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaa 35903572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 11315946 - 11315997
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||  |||||||| ||||||||||||||||||||||||||||||    
T  11315946 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaa 11315997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 564
Target Start/End: Original strand, 17459251 - 17459362
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    |||||||| ||||  || ||||||||  |||||||| ||||||||||||||| ||||||||||||||     |||| |||||| ||| |||| |||  ||    
T  17459251 ggcttatttgatccattagtcccttaaataatttcaagttttcattttggtcacacaattaataaaacgtacgtttaagtccctcactttttcctccgtt 17459350  T
Q  553 tgccaaataaat 564  Q
    ||||||||||||    
T  17459351 tgccaaataaat 17459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 43033099 - 43033146
Alignment:
Q  472 tcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||    
T  43033099 tcccttaaataatttcaagttttcattttggtcccacaattaataaaa 43033146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 7437851 - 7437813
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7437851 taatttcaagttttcattttggtcccacaattaataaaa 7437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 533
Target Start/End: Original strand, 21664816 - 21664881
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtc 533  Q
    ||||||| ||| ||||||||| ||||||||||||||| ||||||| |||||| |  ||||||||||    
T  21664816 ttggtcctttaattaatttcaagttttcattttggtcacacaattcataaaatttctgttttagtc 21664881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 35061434 - 35061381
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcc 505  Q
    ||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||    
T  35061434 aggcttaataggtcatttggtcccttaattaatttgaagttttcattttggtcc 35061381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 37956961 - 37957013
Alignment:
Q  467 tttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||||| |||||||||  ||||||||||||||||| || ||||||||    
T  37956961 tttggtcccttaattaatttcaaattttcattttggtcccataagtaataaaa 37957013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 102475 - 102420
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtccca 507  Q
    ||||||| | |||||||||||||| ||  ||||||| |||||||||||||||||||    
T  102475 aggcttaattgatcatttggtcccctaactaatttcttgttttcattttggtccca 102420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 17460775 - 17460736
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  17460775 ttaatttcaagttttcattttgatcccacaattaataaaa 17460736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 519
Target Start/End: Complemental strand, 32470698 - 32470627
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||| |||||||| ||||  || ||||| ||  |||||||| ||||| ||||||||||||||||||||||||    
T  32470698 tttttggcttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaataaaa 32470627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 522
Target Start/End: Complemental strand, 271890 - 271824
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatg 522  Q
    |||||||||||||| ||||||||  | ||||| | ||||||||||||| ||| | ||||||||||||    
T  271890 ttattagatcatttagtcccttaagttatttcttattttcattttggttccatatttaataaaaatg 271824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 11317458 - 11317420
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  11317458 taatttcaaattttcattttggtcccacaattaataaaa 11317420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 28561382 - 28561432
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||  |||||| | ||||||||||||||| ||||||||||||||    
T  28561382 tggtcccttaaataattttaagttttcattttggtctcacaattaataaaa 28561432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 32469174 - 32469212
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  32469174 taatttcaagttttcattttgatcccacaattaataaaa 32469212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 34147130 - 34147200
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| ||| ||||||||||||| |  ||||||   |||||||||||||||||| || ||||||||    
T  34147130 tttaggcttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaa 34147200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 515
Target Start/End: Original strand, 37956912 - 37956978
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaat 515  Q
    |||||||||| ||| |||||||||| |||| |||||||||  |||| |||||||||||  |||||||    
T  37956912 tttaggcttaataggtcatttggtctcttaattaatttcaaatttttattttggtcccttaattaat 37956978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 519
Target Start/End: Original strand, 34512825 - 34512878
Alignment:
Q  466 atttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| || |||||| |  |||||||||||||||||| |||||||||||    
T  34512825 atttggtcccctaattaattaccagttttcattttggtcccataattaataaaa 34512878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 34513674 - 34513605
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||| |||||||||||| || |||||| |   ||||||||||||| ||| |||||||||||    
T  34513674 ttaggcttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaa 34513605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 519
Target Start/End: Complemental strand, 28562937 - 28562861
Alignment:
Q  443 attccttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||| ||||||||||||| |||    |||||||| |  ||||||||  ||||||||||||||||| |||||||||||    
T  28562937 attctttttaggcttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccataattaataaaa 28562861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 535
Target Start/End: Original strand, 33995948 - 33996027
Alignment:
Q  455 cttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    |||| ||| ||||||||||||||| ||||||| | ||||||||||| || ||| || |||||||| |  ||||||||||||    
T  33995948 cttaataggtcatttggtcccttaattaattttaagttttcatttttgt-ccataactaataaaactcatgttttagtccc 33996027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 36010593 - 36010641
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  ||||||||||||||||||||||||  || ||||||||||    
T  36010593 gtcccttaaataatttcatgttttcattttggtcttacgattaataaaa 36010641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 449 - 565
Target Start/End: Original strand, 15232746 - 15232862
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||| |||    
T  15232746 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctc 15232845  T
Q  549 tatttgccaaataaatc 565  Q
    | |||||||||||||||    
T  15232846 tgtttgccaaataaatc 15232862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 15234164 - 15234046
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||    
T  15234164 tttttggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcct 15234065  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  15234064 ccgtttgccaaataaatcc 15234046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 49801610 - 49801728
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||| ||| ||| |||    
T  49801610 ttttaggcttattagatcatttggtcccttatttaattttatattttcattttggtcccacaattaataaaaatggtgttttgatccctcacgtttgtct 49801709  T
Q  548 ctatttgccaaataaatcc 566  Q
    || ||||||||||||||||    
T  49801710 ctgtttgccaaataaatcc 49801728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 450 - 566
Target Start/End: Complemental strand, 49803016 - 49802900
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || |||||||||     
T  49803016 ttaggcttgttagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccctcatctttttctcc 49802917  T
Q  550 atttgccaaataaatcc 566  Q
     ||||||||||||||||    
T  49802916 gtttgccaaataaatcc 49802900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 16963831 - 16963943
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||  |    
T  16963831 aggcttattagatcgtttggtcttttaattaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccctcatcttttcctccgt 16963930  T
Q  552 ttgccaaataaat 564  Q
    |||||||||||||    
T  16963931 ttgccaaataaat 16963943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 16965228 - 16965163
Alignment:
Q  470 ggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||  |||||||||||    
T  16965228 ggtcccttatttaatttcttattttcattttggtcccacaattaataaaaatgacgttttagtccc 16965163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 564
Target Start/End: Complemental strand, 51042445 - 51042350
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaat 564  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||||||||| |   ||||||||||| |   ||||||||  ||||||||||||||    
T  51042445 ttggtcccttaattaatttccaattttcattttggtcccacaattaataaaactcacgttttagtccctc-tttttttctccgtttgccaaataaat 51042350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 520
Target Start/End: Original strand, 52627512 - 52627580
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||| ||||   |||||||| |  |||||||| |||||||||||||||||||||||||||||||    
T  52627512 aggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaaa 52627580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 14470853 - 14470920
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||   ||||||| ||  |||||||| ||||||||||||||||||||||||||||||    
T  14470853 aggcttatttgatccaatggtcccctaaataatttcaagttttcattttggtcccacaattaataaaa 14470920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 15072881 - 15072842
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15072881 ttaatttcaagttttcattttggtcccacaattaataaaa 15072842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 24499775 - 24499660
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||||||||| |||   |||||||| ||  |||||||| ||||||||||||||| |||||||||||||| |   ||||| ||||| ||| |||| |||      
T  24499775 taggcttatttgatttgttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtccctcactttttcctccg 24499676  T
Q  551 tttgccaaataaatcc 566  Q
    ||| ||||||||||||    
T  24499675 tttaccaaataaatcc 24499660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 42246006 - 42245939
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||||||||||  ||||||| ||||||||| ||||| |||||||| ||| |||||||||||    
T  42246006 aggcttaatagatcatttaatcccttaattaatttcaagtttttattttggttccataattaataaaa 42245939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 519
Target Start/End: Complemental strand, 46111611 - 46111540
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||| |||    ||||||||||  |||||||| ||||| ||||||||||||||||||||||||    
T  46111611 ttttaggcttatttgattcaatggtcccttaaataatttcaagtttttattttggtcccacaattaataaaa 46111540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 15746888 - 15746818
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| ||| |||||||||||| || ||||||||   ||||||||||||||||| || ||||||||    
T  15746888 tttaggcttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaa 15746818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 42244629 - 42244695
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| ||||||||||| ||| |||||||||  ||||||||||| ||||| |||||||||||    
T  42244629 ggcttaataggtcatttggtcctttaattaatttcaaattttcattttgatcccataattaataaaa 42244695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 52628991 - 52628925
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||  | |||||||||  |||||||| ||||| ||||||||||||||||||||||||    
T  52628991 ggcttatttgatctatcggtcccttaaataatttcaagttttaattttggtcccacaattaataaaa 52628925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 566
Target Start/End: Original strand, 15071337 - 15071453
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||||||  |||  |||||||| ||  |||||||| ||||||||||||||| || |||||||||||    |||||| ||||| ||| |||| |||     
T  15071337 ttaggcttatttaatccattggtcccctaaataatttcaagttttcattttggtcacataattaataaaacgtatgttttggtccctcactttttcctcc 15071436  T
Q  550 atttgccaaataaatcc 566  Q
     ||| ||||||||||||    
T  15071437 gtttaccaaataaatcc 15071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 34352056 - 34352008
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||| | ||||||||||||||||||||||||||||||    
T  34352056 gtcccttaaataattttaagttttcattttggtcccacaattaataaaa 34352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 41874094 - 41874022
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||||  ||||||||| | ||||||||   ||||||| |||||| || ||||||||||||    
T  41874094 ttttaggcttattagatccattggtccctcaattaatttccatttttcatcttggtctcataattaataaaaa 41874022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 46318737 - 46318669
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||| ||||||||||| ||| ||||||||| ||||| ||||| |||||| || ||||||||    
T  46318737 taggcttaataggtcatttggtcctttaattaatttcaagttttgatttttgtcccataactaataaaa 46318669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 507
Target Start/End: Original strand, 20064173 - 20064228
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtccca 507  Q
    ||||||| ||| ||||||||||||| | ||||||||  ||||||||||||||||||    
T  20064173 aggcttaatagctcatttggtccctcaattaatttcccgttttcattttggtccca 20064228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 44278440 - 44278401
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  44278440 ttaatttcaagttttcattttggtcccacgattaataaaa 44278401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 46467143 - 46467210
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||| ||| ||| ||| ||| ||||||||| |||||||||||||||||| || ||||||||    
T  46467143 aggcttaataggtcaattgatcctttaattaatttcaagttttcattttggtcccataactaataaaa 46467210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 45585099 - 45585061
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  45585099 taatttcaagttttcattttggtctcacaattaataaaa 45585061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 14477881 - 14477796
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||| | ||||||| |||| |||||||||||||||||     |||| |||||| ||| ||||||||  ||||||||||||||||    
T  14477881 taattttaagttttcactttgatcccacaattaataaaacgtacgtttaagtccctcacttttttctccgtttgccaaataaatcc 14477796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 16123313 - 16123398
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||| | |||||||||||||| ||||||||||||||| |   ||||||||||| ||  ||||  ||  ||||||||||||||||    
T  16123313 taatttaaagttttcattttggttccacaattaataaaattcacgttttagtccctcattttttcttccgtttgccaaataaatcc 16123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 451 - 564
Target Start/End: Original strand, 33231385 - 33231498
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |      
T  33231385 taggcttattagatcatttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaaatggtgttttagtccctcatctttttcaccg 33231484  T
Q  551 tttgccaaataaat 564  Q
    ||||||||||||||    
T  33231485 tttgccaaataaat 33231498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 10168903 - 10168788
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||      
T  10168903 taggcttattagatcgtttggtccattatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctccg 10168804  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  10168803 tttgccaaataaatcc 10168788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 449 - 566
Target Start/End: Original strand, 7707582 - 7707699
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||| |||| |||    
T  7707582 tttaggtttattagatcttttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccatcacattttcctc 7707681  T
Q  549 tatttgccaaataaatcc 566  Q
    | ||||||||||||||||    
T  7707682 tgtttgccaaataaatcc 7707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 7708913 - 7708793
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgt--tttcattttggtcccacaattaataaaaatggtgttttagtcccacaccttttt 545  Q
    |||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| ||| ||||||||||| |||||||||    
T  7708913 ttttaggcttattagatcgtttggtcccttatttaattttatgtgttttcattttggttctacaattaataaaagtggcgttttagtccctcaccttttt 7708814  T
Q  546 ctctatttgccaaataaatcc 566  Q
    |||| ||||||||||||||||    
T  7708813 ctctgtttgccaaataaatcc 7708793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 566
Target Start/End: Original strand, 50546901 - 50547017
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| || ||||| | |     
T  50546901 ttaggcgtattagatcatttggtcccttatttaatttcatgtcttcattttagtcccacaattaataaaaatggcgttttagtccctcatcttttccacc 50547000  T
Q  550 atttgccaaataaatcc 566  Q
     ||||||||||||||||    
T  50547001 gtttgccaaataaatcc 50547017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 448 - 565
Target Start/End: Complemental strand, 54866753 - 54866637
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||  || |||| ||    
T  54866753 tttttggcttattagatcgtttggtcccttatttaatttcatattttcattttggt-ccacaattaataaaaatggtgttttagtcccttacgttttcct 54866655  T
Q  548 ctatttgccaaataaatc 565  Q
    |  |||||||||||||||    
T  54866654 ccgtttgccaaataaatc 54866637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 452 - 566
Target Start/End: Original strand, 23201843 - 23201957
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  |||| ||||| |||||||| |||  |    
T  23201843 aggcttattagattgtttggtcccttatttaatttcatgtttttattttggtcccacatttaataaaaatggcattttggtccctcaccttttcctccgt 23201942  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  23201943 ttgccaaataaatcc 23201957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 23204071 - 23203958
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||  || |||||||||  ||    
T  23204071 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttaataaaaatggcgttttggtccgtcatctttttctccgtt 23203972  T
Q  553 tgccaaataaatcc 566  Q
    |||||| |||||||    
T  23203971 tgccaattaaatcc 23203958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 566
Target Start/End: Original strand, 10167420 - 10167536
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||| ||  |||| |||     
T  10167420 ttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtaccacaattaataaaaattgcattttagtccctcatattttcctcc 10167519  T
Q  550 atttgccaaataaatcc 566  Q
     |||| |||||||||||    
T  10167520 gtttgtcaaataaatcc 10167536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 452 - 565
Target Start/End: Original strand, 4714016 - 4714130
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct-cta 550  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||  ||||| | || ||     
T  4714016 aggcttattagatcgtttggtcccttatttaatttcatatttttattttggtcccacaattaataaaaatggcgttttaatcccttaccttatcctcctt 4714115  T
Q  551 tttgccaaataaatc 565  Q
    |||||||||||||||    
T  4714116 tttgccaaataaatc 4714130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 13165494 - 13165606
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||  || ||||| |||  ||    
T  13165494 ggcttattagatcgtttggtccattatttaatttcatgttttcattttggtccc-taattaataaaaatggcgttttcgtccttcatcttttcctccgtt 13165592  T
Q  553 tgccaaataaatcc 566  Q
    || |||||||||||    
T  13165593 tgtcaaataaatcc 13165606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 456 - 566
Target Start/End: Complemental strand, 50548334 - 50548228
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgc 555  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||||||||||||||| |||   ||||||||||| ||| |||| |||| |||||    
T  50548334 ttattagatcgtttggtcccttattt----tcatgttttcattttggtcccacaattaataagaataacgttttagtccctcacattttcctctgtttgc 50548239  T
Q  556 caaataaatcc 566  Q
    |||||||||||    
T  50548238 caaataaatcc 50548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 467 - 565
Target Start/End: Original strand, 54865117 - 54865214
Alignment:
Q  467 tttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| |||| |||  |||| ||||||||||    
T  54865117 tttggtcccttatttaattttatgttttcattttggtcccataattaat-aaaattgtgttttagtccctcacattttcctccgtttgtcaaataaatc 54865214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 33232785 - 33232703
Alignment:
Q  483 atttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||| |||| |||  |||||||||||||||    
T  33232785 atttcatatttttattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctccgtttgccaaataaatc 33232703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 566
Target Start/End: Original strand, 53204363 - 53204472
Alignment:
Q  457 tattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgcc 556  Q
    |||||||||||||| |||||||  |||||| |||||||||||||| || ||||||||||||||  || |||||||| || ||  ||||||||  ||||||    
T  53204363 tattagatcatttgatcccttaaataatttaatgttttcattttgatctcacaattaataaaacaggcgttttagttcctcaattttttctccgtttgcc 53204462  T
Q  557 aaataaatcc 566  Q
    ||||||||||    
T  53204463 aaataaatcc 53204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 52241274 - 52241207
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  52241274 aggctcattacatcgtttgatcccttatttaatttcatgttttcattttgattccacaattaataaaa 52241207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 6348149 - 6348219
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||||| |||||  |||||||| |  |||||||| ||||||||||||||||||||||||||||||    
T  6348149 tttaggcttatttgatcaaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaa 6348219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 393728 - 393643
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||  ||||||||||||||||||||||||||||||   | |||| ||||| ||| ||||||||  ||||||||||||||||    
T  393728 taatttcaaattttcattttggtcccacaattaataaaaagtatcttttggtccctcacttttttctccgtttgccaaataaatcc 393643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 1588210 - 1588141
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||| |||| |||||||||| |  |||||| | ||||||||||| ||||||||||||||||||    
T  1588210 ttaggcttatttgatcttttggtccctcaaataattttaagttttcattttagtcccacaattaataaaa 1588141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 2310918 - 2310987
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||| ||||   ||||||  || ||||||||| ||||||||||||||||||||||||||||||    
T  2310918 ttaggcttatttgatccaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaa 2310987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 565
Target Start/End: Complemental strand, 2312601 - 2312488
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    ||||||||| ||||  |||||||||||  |||||||| |||| |||||| ||||||||||||||||||     |||| |||||| ||| |||| |||  |    
T  2312601 aggcttatttgatccattggtcccttagataatttcaagtttccattttagtcccacaattaataaaacgtacgtttaagtccctcactttttcctccgt 2312502  T
Q  552 ttgccaaataaatc 565  Q
    ||||||||||||||    
T  2312501 ttgccaaataaatc 2312488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 4871454 - 4871369
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||||||||||||||||| | |||||||||||||    ||||| |||||| ||| ||||||||  |||| |||||||||||    
T  4871454 taatttcatgttttcattttggttctacaattaataaaacgtatgtttaagtcccccacgtttttctccgtttgtcaaataaatcc 4871369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 565
Target Start/End: Original strand, 44501531 - 44501628
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||| |  |||||||| ||||||||| |||||||| |||||||||||     |||| |||||| ||| ||||||||| |||||||||||||||    
T  44501531 ttggtccctcaaataatttcaagttttcattctggtcccataattaataaaacgtacgtttaagtccctcacttttttctctgtttgccaaataaatc 44501628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 53205573 - 53205488
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||  |||||||||| ||||||||||||| ||||  || ||||||||||| ||| |||| |||  ||||||||||||||||    
T  53205573 taatttcagattttcattttcgtcccacaattaaaaaaataggcgttttagtccctcactttttcctccgtttgccaaataaatcc 53205488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 390230 - 390281
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||  |||||||| ||||||||||||||||||||||||||||||    
T  390230 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaa 390281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 1831382 - 1831315
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||   |||||||| | ||||||||| ||||||||||| ||||||||||||||||||    
T  1831382 aggcttatttgatccaatggtccctcaattaatttcaagttttcattttagtcccacaattaataaaa 1831315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 53435860 - 53435805
Alignment:
Q  464 tcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||||||| ||||||||| |||||||||||||||||| || ||||||||    
T  53435860 tcatttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaa 53435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 1190295 - 1190197
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||| |  |||||| | |||||||||||||||||| |||||||||||     |||| ||| || ||| ||||||||| ||||||||||||||||    
T  1190295 ttggtccctcaaataattttaagttttcattttggtcccataattaataaaacgtacgtttaagtacctcacttttttctctgtttgccaaataaatcc 1190197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 1829779 - 1829817
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  1829779 taatttcaagttttcattttggtcccacaattaataaaa 1829817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 4129019 - 4129057
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4129019 taatttcaagttttcattttggtcccacaattaataaaa 4129057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 6349643 - 6349605
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  6349643 taatttcaagttttcattttggtcccacaattaataaaa 6349605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 27851022 - 27850984
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27851022 taatttcaagttttcattttggtcccacaattaataaaa 27850984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 53432060 - 53432126
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| || |||| ||||||| ||||||||| |||||||||||||||||| || ||||||||    
T  53432060 ggcttaataggtcgtttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaa 53432126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Original strand, 11968507 - 11968575
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| |||| | |||| ||| |  |||||||| ||||||||||||||| ||||||||||||||    
T  11968507 taggcttatttgatcttatggttcctcaaataatttcaagttttcattttggtctcacaattaataaaa 11968575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 13531143 - 13531195
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcc 505  Q
    |||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||    
T  13531143 ggcttaataggtcatttggacccttaattaatttcaagttttcattttggtcc 13531195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Original strand, 24426335 - 24426403
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| ||||   |||||||| |  |||||||| ||||||||||||||| ||||||||||||||    
T  24426335 taggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtctcacaattaataaaa 24426403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 37882860 - 37882944
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    |||||||| ||||||||||| ||||||||||||||||||      |||| ||||| |||||||| |||  |||||||||||||||    
T  37882860 taatttcaagttttcattttagtcccacaattaataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 42810303 - 42810255
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  ||||||||  |||||||||||||||||||||||||||||    
T  42810303 gtcccttaaataatttcaacttttcattttggtcccacaattaataaaa 42810255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 40792776 - 40792815
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  40792776 ttaattttaagttttcattttggtcccacaattaataaaa 40792815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 54485664 - 54485597
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||||||| || ||||| ||  |||||||| |||||||||||| ||||| |||||||||||    
T  54485664 aggcttaatagatcacttagtcccctaaataatttcaagttttcattttgatcccataattaataaaa 54485597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 1188869 - 1188907
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  1188869 taatttcaagtttttattttggtcccacaattaataaaa 1188907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 27847704 - 27847742
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  27847704 taatttcaagtttttattttggtcccacaattaataaaa 27847742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 31968511 - 31968397
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    ||||||||||||||    |||||| || ||||||| |  ||||||||||||||| |||||||||||||     ||||| ||||  ||| |||| |||| |    
T  31968511 aggcttattagatccaacggtcccctaattaattttaatttttcattttggtcctacaattaataaaacgtacgttttggtccttcactttttcctctgt 31968412  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  31968411 ttgccaaataaatcc 31968397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 566
Target Start/End: Original strand, 42871120 - 42871206
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||||  ||||||||||| |||||||||||||||||     ||||| ||||| ||| |||| |||  ||||||||||||||||    
T  42871120 ttaatttcaaattttcattttgatcccacaattaataaaacgtacgttttggtccctcactttttcctccgtttgccaaataaatcc 42871206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 52963570 - 52963632
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaa 518  Q
    ||||| ||||| |||||||  ||  |||||||| ||||||||||||||| |||||||||||||    
T  52963570 ttatttgatcaattggtcctctaaataatttcaagttttcattttggtctcacaattaataaa 52963632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 449 - 565
Target Start/End: Original strand, 30910735 - 30910851
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||    
T  30910735 tttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctc 30910834  T
Q  549 tatttgccaaataaatc 565  Q
    | ||| |||||||||||    
T  30910835 tgtttaccaaataaatc 30910851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 33174080 - 33173965
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||| ||||     
T  33174080 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttgatcccacatttaataaaaatggcgttttagtccctcaccttttcctctg 33173981  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  33173980 tttgccaaataaatcc 33173965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 30912280 - 30912167
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||  ||    
T  30912280 ggcttattagatcgtttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccctcacctttttctccgtt 30912181  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  30912180 tgccaaataaatcc 30912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 449 - 566
Target Start/End: Complemental strand, 22308921 - 22308804
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    ||||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||| |||||||||||  || ||||||||||| ||| |||| |||    
T  22308921 tttaggcttattagatcgtttggtcccctaaataatttcatgttttcattttggtcccataattaataaaacaggcgttttagtccctcacattttgctc 22308822  T
Q  549 tatttgccaaataaatcc 566  Q
      ||||||||||||||||    
T  22308821 cgtttgccaaataaatcc 22308804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 22307501 - 22307619
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||| ||||||||| ||   |||||||||||||||||||||| ||| |||||||||||  |||||||||||||| ||| |||| ||    
T  22307501 tttttggcttattagatcgtttggtcccctaaacaatttcatgttttcattttggttccataattaataaaacaggtgttttagtccctcactttttgct 22307600  T
Q  548 ctatttgccaaataaatcc 566  Q
    || ||||||||||||||||    
T  22307601 ctgtttgccaaataaatcc 22307619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 22047729 - 22047796
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||   |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22047729 aggcttatttgatccaatggtcccttaattaatttcaagttttcattttggtcccacaattaataaaa 22047796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 548
Target Start/End: Complemental strand, 1010484 - 1010387
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||||| ||| ||||||||||||||| ||||||||| ||||| |||||||||||| || |||||||| |  |||||| ||||| ||| ||| ||||    
T  1010484 taggcttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctc 1010387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 8521255 - 8521348
Alignment:
Q  455 cttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||| ||| ||||||||||||||| ||||||||| |||||||||||||||||| || |||||||| |  |||||| ||||| ||| ||| ||||    
T  8521255 cttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctc 8521348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 8523865 - 8523798
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||| |||||||||||| || ||||||||| |||||||||||||||||| || ||||||||    
T  8523865 aggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaa 8523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 9169584 - 9169650
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| |||||||| |||||| ||||||||| ||||||||||| |||||| |||||||||||    
T  9169584 ggcttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaa 9169650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 562
Target Start/End: Complemental strand, 30859262 - 30859181
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataa 562  Q
    |||||||| ||||||||||||||||||||||||||||||     |||| |||||| ||| |||| |||| ||||||||||||    
T  30859262 taatttcaagttttcattttggtcccacaattaataaaacgtacgtttaagtccctcacattttcctctgtttgccaaataa 30859181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 325304 - 325237
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||   |||||||| |  |||||||| ||||||||||||||||||||||||||||||    
T  325304 aggcttatttgatctaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaa 325237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 520
Target Start/End: Complemental strand, 34899072 - 34899002
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaa-tttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||  ||||||||||| |||| |||||| ||||||||||||||||| || |||||||||    
T  34899072 ttaggcttattagatccattggtcccttaattaattttcat-ttttcattttggtcccataagtaataaaaa 34899002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 39605560 - 39605521
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39605560 ttaatttcaagttttcattttggtcccacaattaataaaa 39605521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 34894144 - 34894214
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||  ||||||||||| ||||||||   ||||||||||||||||  || |||||||||    
T  34894144 ttaggcttattagatccattggtcccttaattaatttccatttttcattttggtcccgtaagtaataaaaa 34894214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 520
Target Start/End: Original strand, 20538065 - 20538118
Alignment:
Q  467 tttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||| || |||||||||  ||||||||||||||||| ||||||||||||    
T  20538065 tttggtcccctaattaatttcaaattttcattttggtcccataattaataaaaa 20538118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 22049226 - 22049141
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||||||||||||||| |||||||||||     ||||| ||||| ||| |||| |||| |||| |||||||||||    
T  22049226 taatttcaagttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatcc 22049141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 10978399 - 10978331
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| |||||||||||||||| || ||||||||   ||||||||||||||| | || ||||||||    
T  10978399 taggcttaatagatcatttggtcccctaattaatttccaattttcattttggtcctataaataataaaa 10978331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 30857825 - 30857864
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  30857825 ttaattttaagttttcattttggtcccacaattaataaaa 30857864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 1009182 - 1009248
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| ||||||||| || || ||||||||| |||||||||||||| ||| || ||||||||    
T  1009182 ggcttaataggtcatttggttccctaattaatttcaagttttcattttggttccataactaataaaa 1009248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 39603879 - 39603917
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  39603879 taatttcaagttttcattttgatcccacaattaataaaa 39603917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 11846376 - 11846307
Alignment:
Q  466 atttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    ||||||||||||| |||||||   | ||||||||||||| || || ||||||||||  ||||||||||||    
T  11846376 atttggtcccttaattaatttacaggtttcattttggtctcataactaataaaaattttgttttagtccc 11846307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 1273072 - 1273136
Alignment:
Q  441 taattccttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcc 505  Q
    |||||| |||||| |||| || |||||||||||||||| || ||||   ||||||||||||||||    
T  1273072 taattcattttagacttaatacatcatttggtcccttaatttatttttggttttcattttggtcc 1273136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 20539466 - 20539398
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaa 518  Q
    ||||||||| |||||  ||||||||| || ||||||| |  |||||||||||||||||  |||||||||    
T  20539466 ttaggcttaatagattttttggtcccctaattaattttaaattttcattttggtcccattattaataaa 20539398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 33172604 - 33172664
Alignment:
Q  506 cacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||| |||||||||| | |||||||||||  ||| ||||||||  ||||||||||||||||    
T  33172604 cacatttaataaaaaagatgttttagtccttcacatttttctccgtttgccaaataaatcc 33172664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 41798064 - 41798004
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaa 514  Q
    ||||||| ||||  ||||||||| |  |||||||| ||||| |||||||||||||||||||    
T  41798064 gcttatttgatccattggtccctcaaataatttcaagtttttattttggtcccacaattaa 41798004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 13117752 - 13117638
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||| |||| |    
T  13117752 aggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctctgt 13117653  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  13117652 ttgccaaataaatcc 13117638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 452 - 565
Target Start/End: Original strand, 17338038 - 17338151
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||  |    
T  17338038 aggcttattaaatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacatttttctccgt 17338137  T
Q  552 ttgccaaataaatc 565  Q
    ||||||||||||||    
T  17338138 ttgccaaataaatc 17338151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 13116326 - 13116441
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| |||| |||      
T  13116326 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccttcacattttcctccg 13116425  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  13116426 tttgccaaataaatcc 13116441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 566
Target Start/End: Original strand, 42098558 - 42098674
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||| ||| ||| ||||     
T  42098558 ttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttgatcccccacgtttgtctcc 42098657  T
Q  550 atttgccaaataaatcc 566  Q
     ||||||||||||||||    
T  42098658 gtttgccaaataaatcc 42098674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 17339668 - 17339554
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  |||||||||| ||| |||| |||  |    
T  17339668 aggcttattagatcgtttggtcccttatttaatttcatattttcattttggtccaacaattaataaaaatggcattttagtccctcacgttttcctccgt 17339569  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  17339568 ttgccaaataaatcc 17339554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 450 - 562
Target Start/End: Complemental strand, 42100227 - 42100115
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  |||| ||  |||| |||     
T  42100227 ttaggcttattagatcgtttgatcccttatttaatttcatgttttcattttggtctcacaattaataaaaatggcgttttgatccctcatattttcctcc 42100128  T
Q  550 atttgccaaataa 562  Q
     ||||||||||||    
T  42100127 gtttgccaaataa 42100115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 566
Target Start/End: Original strand, 211594 - 211706
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctattt 553  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  |  |||||||||||  |  ||||||||  |||    
T  211594 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 211693  T
Q  554 gccaaataaatcc 566  Q
     ||||||||||||    
T  211694 accaaataaatcc 211706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 240662 - 240550
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctattt 553  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  |  |||||||||||  |  ||||||||  |||    
T  240662 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 240563  T
Q  554 gccaaataaatcc 566  Q
     ||||||||||||    
T  240562 accaaataaatcc 240550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 566
Target Start/End: Original strand, 725217 - 725329
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctattt 553  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  |  |||||||||||  |  ||||||||  |||    
T  725217 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 725316  T
Q  554 gccaaataaatcc 566  Q
     ||||||||||||    
T  725317 accaaataaatcc 725329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 794017 - 793905
Alignment:
Q  454 gcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctattt 553  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  |  |||||||||||  |  ||||||||  |||    
T  794017 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 793918  T
Q  554 gccaaataaatcc 566  Q
     ||||||||||||    
T  793917 accaaataaatcc 793905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 565
Target Start/End: Original strand, 28418800 - 28418916
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||| |||| |||    
T  28418800 tttaggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctc 28418899  T
Q  549 tatttgccaaataaatc 565  Q
      |||||||||||||||    
T  28418900 cgtttgccaaataaatc 28418916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 26696525 - 26696643
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||| |||    ||||||| || ||||||||| ||||||||||||||||||||||||||||||      |||| ||||| ||| |||| ||    
T  26696525 ttttaggcttatttgattcaatggtcccctaattaatttcaagttttcattttggtcccacaattaataaaacatacattttggtccctcactttttcct 26696624  T
Q  548 ctatttgccaaataaatcc 566  Q
    | |||||||||||||||||    
T  26696625 ccatttgccaaataaatcc 26696643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 32797136 - 32797202
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||  |||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  32797136 ggcttatttgatctattggtcccttaaataatttcaagttttcattttggtcccacaattaataaaa 32797202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 469 - 566
Target Start/End: Original strand, 8570132 - 8570229
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||| || ||||||||| |||||||||||||||| |||||||||||||     ||||| ||||| ||| ||| ||||| ||||||||||||||||    
T  8570132 tggtcccctaattaatttcacgttttcattttggtcctacaattaataaaacgtacgttttggtccctcacttttgtctctgtttgccaaataaatcc 8570229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 6397809 - 6397893
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||| ||||||||||||||||||||||||||||| |    |||||||||| ||  ||||||||  |||||||||||||||    
T  6397809 taatttcatattttcattttggtcccacaattaataaaacttacattttagtccctcatttttttctccgtttgccaaataaatc 6397893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 22551033 - 22551117
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| ||||| ||||||||||||||||||||||||    | |||| ||||| || ||||||||| |||||||||||||||||    
T  22551033 taatttcaagtttttattttggtcccacaattaataaaacgtatcttttggtccctca-ctttttctccatttgccaaataaatcc 22551117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 38697126 - 38697058
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||| ||||||||||||| | ||||||||  |||||||||||||||||| || ||||||||    
T  38697126 taggcttaatagctcatttggtccctcaattaatttccagttttcattttggtcccataactaataaaa 38697058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 28420293 - 28420226
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||    
T  28420293 aggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaa 28420226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 519
Target Start/End: Complemental strand, 32798655 - 32798584
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||| |||    |||||||| |  |||||||| ||||||||||||||||||||||||||||||    
T  32798655 ttttaggcttatttgatgcaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaa 32798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 41743734 - 41743667
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||| ||||||||||| ||| ||||||| | |||||||||||||||||| || ||||||||    
T  41743734 aggcttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaa 41743667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 42878935 - 42878880
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtccca 507  Q
    ||||||| ||| |||||||||||| || ||||||||| ||||||||||||||||||    
T  42878935 aggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtccca 42878880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 45394972 - 45395031
Alignment:
Q  460 tagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||| ||||||| ||||||| | |||||||||||| ||||| |||||||||||    
T  45394972 tagatcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaa 45395031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 45437601 - 45437534
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| ||| ||||||| |||| || ||||||||| |||||||||||| ||||| |||||||||||    
T  45437601 aggcttaataggtcatttgatcccctaattaatttcaagttttcattttgatcccataattaataaaa 45437534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 42870839 - 42870877
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  42870839 taatttcaagttttcattttggtcccacaattaataaaa 42870877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 42877614 - 42877683
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||| | |||||||| |||| ||||||||| ||||||||||||||| || || ||||||||    
T  42877614 ttaggcttaataggttatttggtctcttaattaatttcaagttttcattttggtctcataactaataaaa 42877683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 45281278 - 45281194
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||||||||||||| |||||||||||||||  ||||||  |||  ||  |||| ||| |||||||||||||||||    
T  45281278 taatttcaagttttcattttggtccaacaattaataaaaat-atgttttgatccttcagattttcctccatttgccaaataaatcc 45281194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 212802 - 212718
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||  |||||||||| ||||||||||||| ||||  |||||||||||||| ||| |||| ||   |||| ||||||||||    
T  212802 taatttcagattttcattttcgtcccacaattaaaaaaacaggtgttttagtccctcactttttccttcgtttgtcaaataaatc 212718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 239452 - 239536
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||  |||||||||| ||||||||||||| ||||  |||||||||||||| ||| |||| ||   |||| ||||||||||    
T  239452 taatttcagattttcattttcgtcccacaattaaaaaaacaggtgttttagtccctcactttttccttcgtttgtcaaataaatc 239536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 726425 - 726341
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||  |||||||||| ||||||||||||| ||||  |||||||||||||| ||| |||| ||   |||| ||||||||||    
T  726425 taatttcagattttcattttcgtcccacaattaaaaaaacaggtgttttagtccctcactttttccttcgtttgtcaaataaatc 726341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 792807 - 792891
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||  |||||||||| ||||||||||||| ||||  |||||||||||||| ||| |||| ||   |||| ||||||||||    
T  792807 taatttcagattttcattttcgtcccacaattaaaaaaacaggtgttttagtccctcactttttccttcgtttgtcaaataaatc 792891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 798926 - 798842
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    ||||||||  |||||||||| ||||||||||||| ||||  |||||||||||||| ||| |||| ||   |||| ||||||||||    
T  798926 taatttcagattttcattttcgtcccacaattaaaaaaacaggtgttttagtccctcactttttccttcgtttgtcaaataaatc 798842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 32695395 - 32695327
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| |||   ||||||||| |  |||||||| ||||||||||||||| ||||||||||||||    
T  32695395 taggcttatttgattcattggtccctcaaataatttcaagttttcattttggtctcacaattaataaaa 32695327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 32693855 - 32693894
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  32693855 ttaattttaagttttcattttggtcccacaattaataaaa 32693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 22335977 - 22336090
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||  ||    
T  22335977 ggcttattagatcttttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctcagtt 22336076  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  22336077 tgccaaataaatcc 22336090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 13564358 - 13564244
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||| |||  |    
T  13564358 aggcttattagatcatttagtcccttatttaatttcttgttttcattttggtcccacaattaataaaactggcgttttagtccctcacattttcctccgt 13564259  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  13564258 ttgccaaataaatcc 13564244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 453 - 565
Target Start/End: Complemental strand, 22538966 - 22538854
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| || ||||| |||  ||    
T  22538966 ggcttattagatcgtttggtcccttatttaatttcatgttttctttttggtcccacaattaataaaaatgacgttttagtccctcatcttttcctccgtt 22538867  T
Q  553 tgccaaataaatc 565  Q
    |||||||||||||    
T  22538866 tgccaaataaatc 22538854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 13562818 - 13562933
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||     
T  13562818 taggcttattagatcgtttagtcccttatttaatttcttgtttttattttggtcccacaagtaataaaaatggcgttttagtccctcacatttttctctg 13562917  T
Q  551 tttgccaaataaatcc 566  Q
    ||| ||||||||||||    
T  13562918 tttaccaaataaatcc 13562933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 455 - 566
Target Start/End: Original strand, 11501180 - 11501291
Alignment:
Q  455 cttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttg 554  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||| |||||||| ||| |||||    
T  11501180 cttattagatcgtttggtcctttaattaatttcatgttttcattttggtcccacagttaataaaaatagcattttagtccctcaccttttcctccatttg 11501279  T
Q  555 ccaaataaatcc 566  Q
    ||||||||||||    
T  11501280 ccaaataaatcc 11501291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 3413525 - 3413643
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||||| ||||||||  ||  ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||    
T  3413525 tttttggcttattagatcgtttggtcctctaaataatttcgtgttttcattttggtcctacaattaataaaaatggcgttttagtccctcaccttttact 3413624  T
Q  548 ctatttgccaaataaatcc 566  Q
    || ||||||||||||||||    
T  3413625 ctgtttgccaaataaatcc 3413643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 22537552 - 22537670
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||   ||||  |||| ||| ||| |||    
T  22537552 ttttaggcttattagatcgtttgctcccttatttaattttatattttcattttggtcccacaattactaaaaatgacattttgatccctcacgtttgtct 22537651  T
Q  548 ctatttgccaaataaatcc 566  Q
    || ||||||||||||||||    
T  22537652 ctgtttgccaaataaatcc 22537670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 3414952 - 3414839
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||| | ||| ||||| ||  ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||| ||| |||    
T  3414952 ggcttattagaacgtttagtcccctaaataatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccttcactttttcctccatt 3414853  T
Q  553 tgccaaataaatcc 566  Q
    ||||||||||||||    
T  3414852 tgccaaataaatcc 3414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 11502541 - 11502427
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||| |||||||| |||  ||||||||||||||||||||| ||||||| ||||||||||| | |  |||||||| || ||||| |||| |    
T  11502541 aggcttattagatcgtttggtcctttaactaatttcatgttttcattttgatcccacatttaataaaaattgcgaattagtccctcaacttttgctctgt 11502442  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  11502441 ttgccaaataaatcc 11502427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 452 - 523
Target Start/End: Complemental strand, 22337489 - 22337418
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgg 523  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  22337489 aggcttattagattgtttggtcccttatttagtttcatgttttcattttgatcccacaattaataaaaatgg 22337418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 40738957 - 40738843
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa-tggtgttttagtcccacacctttttctctat 551  Q
    ||||||||||||| ||||||||| ||   ||||||||||||| |||||||||||| ||||||||||||  || ||||||||||| ||| |||| |||| |    
T  40738957 ggcttattagatcgtttggtcccctaaacaatttcatgtttttattttggtcccataattaataaaaacaggcgttttagtccctcactttttgctctgt 40738858  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  40738857 ttgccaaataaatcc 40738843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 40812731 - 40812665
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  40812731 ggcttattagatcgtttgatcccttatttaatttcatgttttcattttggttccataattaataaaa 40812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 24844254 - 24844372
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||| ||||| ||||  ||| ||||||||||||||| ||||||| ||||| || | |||||||||| |||||| ||||||||||| ||| ||||  |    
T  24844254 ttttaggtttattggatcgattgatcccttatttaattttatgtttttatttttgttctacaattaatacaaatggcgttttagtccctcacattttctt 24844353  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  24844354 ccgtttgccaaataaatcc 24844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 24844454 - 24844399
Alignment:
Q  467 tttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatg 522  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  24844454 tttgatcccttatttaatttcatgttttcattttgatcctacaattaataaaaatg 24844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 4300138 - 4300054
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    |||||||| ||||||||||||||||||||||||||||||     |||| |||||| ||| |||| |||| |||||||||||||||    
T  4300138 taatttcaagttttcattttggtcccacaattaataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatc 4300054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 24281075 - 24281139
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||| |||  ||  |||||||||||||| |||||||||||||||||||||||||    
T  24281075 ttattagatcatttgatcctctaaataatttcatgtttttattttggtcccacaattaataaaaa 24281139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 519
Target Start/End: Original strand, 38539667 - 38539735
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||| || ||||||||    
T  38539667 taggcttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaa 38539735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 535
Target Start/End: Complemental strand, 534165 - 534102
Alignment:
Q  472 tcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    ||||||| |||||||||| |||||||||||||| |||| |||||||||||||||  ||||||||    
T  534165 tcccttaattaatttcatcttttcattttggtctcacatttaataaaaatggtgaattagtccc 534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 535
Target Start/End: Original strand, 537331 - 537394
Alignment:
Q  472 tcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    ||||||| |||||||||| |||||||||||||| |||| |||||||||||||||  ||||||||    
T  537331 tcccttaattaatttcatcttttcattttggtctcacatttaataaaaatggtgaattagtccc 537394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 45454034 - 45454149
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||||||||| ||| |  ||||||| || ||||||||| ||||||||||||||| || |||||||||||     ||||||||||| ||| |||| |||      
T  45454034 taggcttatttgattaaatggtcccctaattaatttcacgttttcattttggtctcataattaataaaacatacgttttagtccctcactttttcctccg 45454133  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  45454134 tttgccaaataaatcc 45454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 45455474 - 45455424
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  45455474 tggtcccttaattaatttcaaattttcattttggtcccacaattaataaaa 45455424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 565
Target Start/End: Original strand, 32602927 - 32603043
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||||||||| ||||  ||||||| | |  |||||||| ||||| |||||||||||| |||||||||||     ||||||||||| ||| |||| |||    
T  32602927 tttaggcttatttgatccattggtccttcaaataatttcaagtttttattttggtcccataattaataaaacgtacgttttagtccctcactttttactc 32603026  T
Q  549 tatttgccaaataaatc 565  Q
      |||||||||||||||    
T  32603027 cgtttgccaaataaatc 32603043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 520
Target Start/End: Original strand, 41078749 - 41078821
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||||   |||||||| | ||||||||   |||||||||||||||||||||| |||||||    
T  41078749 ttttaggcttattagatccgctggtccctcaattaatttccatttttcattttggtcccacaattgataaaaa 41078821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 43459481 - 43459565
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    |||||||| ||||||||||||||||||||||||||||||   | |||| |||||| ||  |||| |||  |||||||||||||||    
T  43459481 taatttcaagttttcattttggtcccacaattaataaaacgtgcgtttaagtccctcatgttttcctccgtttgccaaataaatc 43459565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 43460904 - 43460828
Alignment:
Q  490 gttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||||||||||||||||||||||||      |||||||||| ||| |||| ||| |||||||||||||||||    
T  43460904 gttttcattttggtcccacaattaataaaacgtacattttagtccctcactttttcctccatttgccaaataaatcc 43460828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 565
Target Start/End: Original strand, 4298708 - 4298823
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    ||||||||||| ||||   ||||||| ||  |||||| | ||||| |||||| |||||||||||||||||   | |||| |||||| ||| |||| ||||    
T  4298708 ttaggcttatttgatccaatggtcccctaaataattttaagtttttattttgatcccacaattaataaaatgtgggtttaagtccctcactttttcctct 4298807  T
Q  550 atttgccaaataaatc 565  Q
     |||||||||||||||    
T  4298808 gtttgccaaataaatc 4298823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 22039123 - 22039186
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaatt 512  Q
    |||||||||||| ||||||||| |||||||  | ||||| ||||||||||||||||||| ||||    
T  22039123 tttaggcttatttgatcatttgatcccttaacttatttcttgttttcattttggtcccataatt 22039186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 519
Target Start/End: Original strand, 25533197 - 25533252
Alignment:
Q  464 tcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| |||| ||||||||| |||||||||||||||||| || ||||||||    
T  25533197 tcatttggtctcttaattaatttcaagttttcattttggtcccataactaataaaa 25533252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 30333298 - 30333349
Alignment:
Q  468 ttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||  |||||||| ||||||||||||||||||||||||||||||    
T  30333298 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaa 30333349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 519
Target Start/End: Complemental strand, 47456494 - 47456427
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||   |||||||| |  |||||||| ||||||||||||||||||||||||||||||    
T  47456494 aggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaa 47456427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 11344533 - 11344571
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  11344533 taatttcaagttttcattttggtcccacaattaataaaa 11344571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 22115254 - 22115216
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22115254 taatttcaagttttcattttggtcccacaattaataaaa 22115216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 30334755 - 30334689
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||||||  |||||||| ||  |||||||| ||||||||||| ||||||||||||||||||    
T  30334755 ggcttaatagatccattggtcccctaactaatttcaagttttcattttagtcccacaattaataaaa 30334689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 32254987 - 32255053
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| |||||||||||||| |  ||||||||  |||| |||||||||||| |||||||||||    
T  32254987 ggcttattaaatcatttggtccctcaaataatttcaaatttttattttggtcccataattaataaaa 32255053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 40509824 - 40509786
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  40509824 taatttcaagttttcattttggtcccacaattaataaaa 40509786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 9660119 - 9660171
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcc 505  Q
    |||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||    
T  9660119 ggcttaataggtcatttggacccttaattaatttcaagttttcattttggtcc 9660171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 30310137 - 30310185
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||| ||||||||||| ||||||||||||||||||    
T  30310137 gtcccttaaataatttcaagttttcatttttgtcccacaattaataaaa 30310185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 535
Target Start/End: Complemental strand, 33779204 - 33779120
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccc 535  Q
    |||||||||| ||||  || ||||| ||  |||||||| ||||||||||||| |||||||||||||||| |   |||||||||||    
T  33779204 taggcttatttgatccattagtcccctaaataatttcaagttttcattttggccccacaattaataaaactcacgttttagtccc 33779120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 35664404 - 35664332
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||||||  ||| ||||||| ||||||||   ||||||||||| ||||| || |||||||||    
T  35664404 ttttaggcttattagatccattgatcccttaattaatttccatttttcattttgatcccataagtaataaaaa 35664332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 564
Target Start/End: Complemental strand, 32256485 - 32256402
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaat 564  Q
    |||||||| |||||||||||||||||| |||||||||||      |||| ||||| ||| |||| ||| |||||||||||||||    
T  32256485 taatttcaagttttcattttggtcccataattaataaaatgtaccttttggtccctcactttttcctccatttgccaaataaat 32256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 47059101 - 47059172
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||| ||||||||||||    ||||||| || ||||||| | |||||||||||||||| |||||||||||||    
T  47059101 ttttgggcttattagattcaatggtcccctaattaattttaagttttcattttggtcctacaattaataaaa 47059172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 47454330 - 47454401
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||| |||||||| ||||   |||||||| |  |||||||| | ||||||||||||||||||||||||||||    
T  47454330 tttttggcttatttgatccagtggtccctcaaataatttcaagctttcattttggtcccacaattaataaaa 47454401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 30311559 - 30311521
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  30311559 taatttcaaattttcattttggtcccacaattaataaaa 30311521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 40508404 - 40508442
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  40508404 taatttcaagttttcatttttgtcccacaattaataaaa 40508442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 24283065 - 24282981
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||  ||||||||||||| |||||||||| ||||  || | ||||||||| ||| |||| |||  ||||||||||||||||    
T  24283065 taatttcagattttcattttggttccacaattaa-aaaacaggcgctttagtccctcacattttcctccgtttgccaaataaatcc 24282981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 566
Target Start/End: Original strand, 33096863 - 33096980
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||||||||| ||||   |||||||| |  |||||||| ||| ||||||| | |||||||||||||||| |    |||| ||||| ||| |||| |||    
T  33096863 tttaggcttatttgatccaatggtccctcaaataatttcaagttctcattttaggcccacaattaataaaacttaccttttggtccctcactttttcctc 33096962  T
Q  549 tatttgccaaataaatcc 566  Q
      ||||||||||||||||    
T  33096963 cgtttgccaaataaatcc 33096980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 35217 - 35157
Alignment:
Q  447 cttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtccca 507  Q
    ||||| |||||| ||| |||||||||||||||  |||||||   |||||||||||||||||    
T  35217 ctttttggcttaataggtcatttggtcccttaaataatttccaattttcattttggtccca 35157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 451 - 561
Target Start/End: Original strand, 35370909 - 35371019
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| ||||     
T  35370909 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttgatcccacaattaataaaaatggtgttttagtccttcaccttttcctctg 35371008  T
Q  551 tttgccaaata 561  Q
    |||| ||||||    
T  35371009 tttgtcaaata 35371019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 566
Target Start/End: Complemental strand, 53614392 - 53614278
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||| ||| |||| ||||||    
T  53614392 aggcttattagatcgtttggtcccttatttaatttcttgtttttattttggtcccacaattaataaaactggcgttttagtccctcacattttcctctat 53614293  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  53614292 ttgccaaataaatcc 53614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 27837916 - 27838031
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||      
T  27837916 taggtttattagatcgtttgatcccttatttaatttcatgttttcattttggtcccacaattaataaatatggcgttttagtccctcaccttttcctccg 27838015  T
Q  551 tttgccaaataaatcc 566  Q
    ||||||||||||||||    
T  27838016 tttgccaaataaatcc 27838031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 441 - 564
Target Start/End: Complemental strand, 26887685 - 26887562
Alignment:
Q  441 taattccttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacc 540  Q
    |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||| || |    
T  26887685 taattcttgttaggcttattagatcgtttggtcccttatttaatttcatgttttcatttttgtcccacaattaataaaaatggcaatttagtccctcatc 26887586  T
Q  541 tttttctctatttgccaaataaat 564  Q
    |||| |||| ||| ||||||||||    
T  26887585 ttttcctctgtttcccaaataaat 26887562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 35372284 - 35372163
Alignment:
Q  448 ttttaggcttattagatcatttggtccc---ttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttt 544  Q
    |||| ||||||||||||| |||||||||   || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  35372284 tttttggcttattagatcgtttggtccccccttttttaatttcatgttttcattttggtctcacaattaataaaaatggcgttttagtccctcacctttt 35372185  T
Q  545 tctctatttgccaaataaatcc 566  Q
     |||| ||||||||||||||||    
T  35372184 cctctgtttgccaaataaatcc 35372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 453 - 565
Target Start/End: Complemental strand, 41264771 - 41264659
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||  |||| ||||||||||||  ||    
T  41264771 ggcttattagattgtttggtcccttatttaatttcatgttttcattttggtctcacatttaataaaaatggcgttttgatccctcacctttttctccgtt 41264672  T
Q  553 tgccaaataaatc 565  Q
    |||||||||||||    
T  41264671 tgccaaataaatc 41264659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 452 - 566
Target Start/End: Original strand, 26886269 - 26886383
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctat 551  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||  |||| ||| ||| ||||| |    
T  26886269 aggcttattagattgtttggtcccttatttaatttcatattttcattttggtctaacaattaataaaaatggtgttttgatccctcacgtttgtctctgt 26886368  T
Q  552 ttgccaaataaatcc 566  Q
    |||||||||||||||    
T  26886369 ttgccaaataaatcc 26886383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 53612864 - 53612982
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    |||| ||||||||||| | |||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||| ||| |||| ||    
T  53612864 tttttggcttattagaacgtttaatcccttatttaatttcttgttttcattttggtcccataattaataaaaatggcgttttattccctcacattttcct 53612963  T
Q  548 ctatttgccaaataaatcc 566  Q
    || ||||||||||||||||    
T  53612964 ctgtttgccaaataaatcc 53612982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 564
Target Start/End: Complemental strand, 10732247 - 10732136
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatt 552  Q
    ||||||||||||| |||| |||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||| |||  ||    
T  10732247 ggcttattagatcgtttgatcccttatttaatttattgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctccgtt 10732148  T
Q  553 tgccaaataaat 564  Q
    | ||||||||||    
T  10732147 taccaaataaat 10732136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 10730878 - 10730996
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||| |||| |||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||  |||| ||||  ||| |||||||    
T  10730878 ttttaggcttattggatcgtttgatcccttattcaatttcttgttttcattttggtcccataattaataaaaatggcattttggtccttcacttttttct 10730977  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  10730978 ccgtttgccaaataaatcc 10730996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 41263634 - 41263749
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||  |||| ||||  || |||||||||      
T  41263634 taggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttattaaaaatggcattttggtccgtcatctttttctccg 41263733  T
Q  551 tttgccaaataaatcc 566  Q
    |||| ||| |||||||    
T  41263734 tttgtcaattaaatcc 41263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 42686266 - 42686151
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    ||||||||||||||||||||| |||||||  |||||  ||||||| |||||| ||| |||||||||||||  ||  |||||||||| ||| |||||||||    
T  42686266 ttaggcttattagatcatttgatcccttaaataattctatgtttttattttgatcctacaattaataaaacaggcattttagtccctcacttttttctct 42686167  T
Q  550 atttgccaaataaatc 565  Q
     |||| ||||||||||    
T  42686166 gtttgtcaaataaatc 42686151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 18458747 - 18458663
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatc 565  Q
    |||||||| ||||| |||||||||||||||||||||||| | | ||||||||||| ||| |||| |||  |||||||||||||||    
T  18458747 taatttcaagtttttattttggtcccacaattaataaaacttgcgttttagtccctcactttttcctccgtttgccaaataaatc 18458663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 563
Target Start/End: Complemental strand, 37736181 - 37736089
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaa 563  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||||||     ||||||||||| ||| ||||||||  |||||||||||||    
T  37736181 gtcccttaaataatttcatgttttcattttggtctcacaattaataaaacgtacgttttagtccctcacttttttctccgtttgccaaataaa 37736089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 565
Target Start/End: Original strand, 50809416 - 50809531
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    ||||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||| |||| |||     
T  50809416 ttaggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctcc 50809515  T
Q  550 atttgccaaataaatc 565  Q
     |||||||||||||||    
T  50809516 gtttgccaaataaatc 50809531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 50866446 - 50866331
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    ||||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||| |||| |||     
T  50866446 ttaggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctcc 50866347  T
Q  550 atttgccaaataaatc 565  Q
     |||||||||||||||    
T  50866346 gtttgccaaataaatc 50866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 3817381 - 3817315
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||| | |||||||||    
T  3817381 ggcttattagatcgtttggtcccctaactaatttcatgttttcattttggtcccatatttaataaaa 3817315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 36176598 - 36176512
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacaccttttt-ctctatttgccaaataaatc 565  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||| ||||| ||  ||||| |||| |||||||||||||||    
T  36176598 ttaatttcatgttttcattttggtcccacaattaataaaatgtatgttttggtccctcatttttttcctctgtttgccaaataaatc 36176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 53194960 - 53194875
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||||||||||||||| |||||||||||     ||||| ||||| ||| |||| |||||||||||||||||||||    
T  53194960 taatttcaagttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatcc 53194875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 519
Target Start/End: Original strand, 40244183 - 40244251
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| ||||  |||||||||||  |||||||| ||||||||||||||| ||||||||||||||    
T  40244183 taggcttatttgatccattggtcccttaaataatttcaagttttcattttggtctcacaattaataaaa 40244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 3811525 - 3811591
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||| |||||| || ||  ||||||||||||||||||||||||||| | |||||||||    
T  3811525 ggcttattagatcgtttggtaccctaactaatttcatgttttcattttggtcccatatttaataaaa 3811591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 566
Target Start/End: Original strand, 34818111 - 34818197
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    || ||| ||||| ||  |||| ||| |||||||||||||||||    
T  34818111 ttaatttcaagttttcattttggtcccacaattaataaaacgtatgatttggtccctcagattttcctccatttgccaaataaatcc 34818197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 565
Target Start/End: Complemental strand, 50810954 - 50810840
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||  |||| |||      
T  50810954 taggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccg 50810855  T
Q  551 tttgccaaataaatc 565  Q
    |||||||||||||||    
T  50810854 tttgccaaataaatc 50810840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 565
Target Start/End: Original strand, 50864910 - 50865024
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctcta 550  Q
    |||||||| ||||||  |||||||||||  ||||||||  ||||||||||||||||| |||||||||||     ||||||||||| ||  |||| |||      
T  50864910 taggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccg 50865009  T
Q  551 tttgccaaataaatc 565  Q
    |||||||||||||||    
T  50865010 tttgccaaataaatc 50865024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 565
Target Start/End: Original strand, 37735299 - 37735416
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||||||||| ||||  ||||||| |||  |||||| | |||||||||||||||||| |||||||||||    |||||||||||| ||  |||||||    
T  37735299 ttttaggcttatttgatccattggtcctttaaataattttaagttttcattttggtcccataattaataaaacgtatgttttagtccctcatttttttct 37735398  T
Q  548 ctatttgccaaataaatc 565  Q
       |||| ||||||||||    
T  37735399 tcgtttgtcaaataaatc 37735416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 18442278 - 18442316
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18442278 taatttcaagttttcattttggtcccacaattaataaaa 18442316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 19487352 - 19487390
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  19487352 taatttcaagttttcattttggtcccacaattaataaaa 19487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 566
Target Start/End: Complemental strand, 53421852 - 53421766
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||| | ||||||||||| |||| |||||||||||||     ||||| ||||| ||| ||||||||| ||||||||||||||||    
T  53421852 ttaattttacgttttcattttagtcctacaattaataaaacgtacgttttggtccctcacttttttctctgtttgccaaataaatcc 53421766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 566
Target Start/End: Complemental strand, 38242606 - 38242521
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||||||||| |||||||||||||||||      |||| ||||| ||| ||||| ||| ||||||||||||||||    
T  38242606 taatttcaagttttcattttgatcccacaattaataaaacgtaccttttggtccctcacttttttatctgtttgccaaataaatcc 38242521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 3455745 - 3455677
Alignment:
Q  451 taggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||| ||| ||||||||||||  | ||||||||| ||||||||||||||| || || ||||||||    
T  3455745 taggcttaataggtcatttggtccccgaattaatttcaagttttcattttggtctcataactaataaaa 3455677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 12108083 - 12108035
Alignment:
Q  471 gtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||| ||||||||||||||||||||| ||||||||    
T  12108083 gtcccttaaataatttcaagttttcattttggtcccacaactaataaaa 12108035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 38240903 - 38240970
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||  ||||||||||   ||||||||  |||| ||||||||||||||||||||||||    
T  38240903 aggcttatttgatccattggtcccttgaataatttcaaatttttattttggtcccacaattaataaaa 38240970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 43174813 - 43174758
Alignment:
Q  464 tcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||||||||||||||| | ||||||||||||  |||| || ||||||||    
T  43174813 tcatttggtcccttatttaattttaagttttcattttgaccccataactaataaaa 43174758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 3210033 - 3209983
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||||  |||||| |  |||||||||||||||||||||||||||||    
T  3210033 tggtcccttaaataattttaaattttcattttggtcccacaattaataaaa 3209983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 18197173 - 18197211
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  18197173 taatttcaaattttcattttggtcccacaattaataaaa 18197211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 53420342 - 53420380
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  53420342 taatttcatattttcattttggtcctacaattaataaaa 53420380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 40364345 - 40364430
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| |||||||||||||||| | |||||||||||     |||| |||||| ||  ||||||||  ||||||||||||||||    
T  40364345 taatttcaagttttcattttggtcctaaaattaataaaatgtacgtttaagtccctcatttttttctccgtttgccaaataaatcc 40364430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 42684902 - 42684987
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||| | |||||||||||||| ||| ||| ||||||| ||  ||||||||||| ||  ||||||| | ||| ||||||||||||    
T  42684902 taattttaagttttcattttggttccataatgaataaaactgacgttttagtccctcatttttttctatgtttaccaaataaatcc 42684987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 55328396 - 55328331
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacaccttttt 545  Q
    ||||||||| |||||||||||| || || ||||||||||| |  |||||||||||| ||| |||||    
T  55328396 ttaatttcaagttttcattttgatctcataattaataaaattcatgttttagtccctcactttttt 55328331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 8371200 - 8371268
Alignment:
Q  438 ttttaattccttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtccc 506  Q
    ||||||||  ||||||||||| || |||||||| |||||||  | ||||  ||||||||||||||||||    
T  8371200 ttttaattatttttaggcttaatacatcatttgatcccttaacttattttttgttttcattttggtccc 8371268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 63254 - 63136
Alignment:
Q  448 ttttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttct 547  Q
    ||||||| |||||||||| ||||||||   |  ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||    
T  63254 ttttaggtttattagatcgtttggtcctccaaataatttcgtgttttcattttggtcccacaattaataaagatggcgttttagtccctcacatttttct 63155  T
Q  548 ctatttgccaaataaatcc 566  Q
    |  ||||||||||||||||    
T  63154 ccgtttgccaaataaatcc 63136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 565
Target Start/End: Original strand, 61846 - 61961
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctct 549  Q
    |||||||||||||| | ||||||||| ||  |||||||||||||||||||||||| || ||||||||||||||| ||||||||||| || |||||  ||     
T  61846 ttaggcttattagaacgtttggtcccctaaataatttcatgttttcattttggtctcataattaataaaaatggcgttttagtccctcatcttttcttcc 61945  T
Q  550 atttgccaaataaatc 565  Q
     |||||||||||||||    
T  61946 gtttgccaaataaatc 61961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 858 - 791
Alignment:
Q  456 ttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgg 523  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  858 ttattagatcgtttggtcctttatttaatttcatgtttttattttggtccctcaattaataaaaatgg 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 469 - 566
Target Start/End: Complemental strand, 109847 - 109750
Alignment:
Q  469 tggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||||  |||||||| |||||||||||||||| |||||||||||||      |||||||||| ||| |||||||| ||||||||||| |||||    
T  109847 tggtcccttaaataatttcaagttttcattttggtcctacaattaataaaacgtacattttagtccctcacttttttctcaatttgccaaatgaatcc 109750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 2594 - 2527
Alignment:
Q  452 aggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaa 520  Q
    ||||||||||||||| ||||||||| | ||||||||   ||||||||||||||||||||||||||||||    
T  2594 aggcttattagatcaattggtccctcaattaatttcca-ttttcattttggtcccacaattaataaaaa 2527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 18838 - 18923
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||| | |||||||||||||||||| | ||||||||| |  |||||||||||| ||| |||| |||  ||||||||||||||||    
T  18838 taattttaagttttcattttggtcccatatttaataaaacttatgttttagtccctcactttttactccgtttgccaaataaatcc 18923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 123995 - 124080
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    |||||||| ||||||||||||||||||||||||||||||      |||| ||||| ||| |||| |||| ||||||||||||||||    
T  123995 taatttcaagttttcattttggtcccacaattaataaaacgtacattttggtccctcactttttcctctgtttgccaaataaatcc 124080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 125323 - 125285
Alignment:
Q  481 taatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  125323 taatttcaaattttcattttggtcccacaattaataaaa 125285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 127428 - 127497
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    ||||||||| ||| |||||||||||| || ||||||||| |||||| ||||||||||| || ||||||||    
T  127428 ttaggcttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaa 127497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 505
Target Start/End: Complemental strand, 128712 - 128657
Alignment:
Q  450 ttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcc 505  Q
    ||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||    
T  128712 ttaggcttaataggtcatttggtcccttaattaattttaagttttcattttggtcc 128657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 565
Target Start/End: Complemental strand, 54307 - 54191
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctc 548  Q
    |||||||||||| ||||  ||||||||| |  |||||||| ||||| ||||||||| ||||||||||||||   | ||||| ||||| ||  |||| |||    
T  54307 tttaggcttatttgatccattggtccctcaaataatttcaagttttaattttggtcgcacaattaataaaacgtgcgttttggtccctcaaattttcctc 54208  T
Q  549 tatttgccaaataaatc 565  Q
      |||||||||||||||    
T  54207 cgtttgccaaataaatc 54191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 566
Target Start/End: Original strand, 52617 - 52703
Alignment:
Q  480 ttaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtcccacacctttttctctatttgccaaataaatcc 566  Q
    ||||||||| |||||||||||| |||||||||||||||||     ||||| ||||| ||  ||||||||  ||||||||||||||||    
T  52617 ttaatttcaagttttcattttgatcccacaattaataaaatgtacgttttggtccctcagatttttctccgtttgccaaataaatcc 52703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 1207 - 1137
Alignment:
Q  449 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||||||| ||| ||||||||||||| |  |||||||  |||||||||||||||||| || ||||||||    
T  1207 tttaggcttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaa 1137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 799 - 733
Alignment:
Q  453 ggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaa 519  Q
    |||||| ||| |||||||||||  || ||||||||  |||||||||||||||||| || ||||||||    
T  799 ggcttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaa 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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