View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_38 (Length: 524)
Name: NF1498_high_38
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 21 - 514
Target Start/End: Complemental strand, 5534925 - 5534433
Alignment:
| Q |
21 |
tacggcaagtcatagaccagactctaatattttaaagtctgatttagtctattcttacccctaactacaactctctctttatgacaaacaagagcaccct |
120 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
5534925 |
tacgacaagtcatagaccagactccgatattttaaagtctgatttagtctattcttacccctacctataactctctctttatgacaaacaagagcaccct |
5534826 |
T |
|
| Q |
121 |
cccactgccaactaacttctctctaccacttcactacccttcttagcccttctatgaaccttccatannnnnnngtttactcaaagtatcattggtctca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5534825 |
cccactgccaactaacttctctctaccacttcactacccttcttagcccttctatgaaccttccatatttttttgtttactcaaagtatcattggtctca |
5534726 |
T |
|
| Q |
221 |
catccattatgatgtgtcaacttaaaaaacgagctttcaaagatgtttttattatcttcgtcaacatatacaaaaacacggatatttaagtttacgggtt |
320 |
Q |
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|||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5534725 |
catccattatgatgtgtcaagttaaaaat-gagcttccaaagatgtttttattatcttcgtcaacatgtacaaaaacacggatatttaagtttacgggtt |
5534627 |
T |
|
| Q |
321 |
aagtttttaccgtatgtttaaccggaataacgtttgctaaggatatagacctctccttaatatcaagtcttaaagatagcaattaatctagagactatac |
420 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5534626 |
aagtttttaccgtatgtttaaccggaataacgtttgctaaggatatagacctctccttaatatcaagtcttaaagatagcaattaatctagagactatac |
5534527 |
T |
|
| Q |
421 |
ccgatcctcaagtttaaataattatctaaatcaacaattattctaatttgtatccaaataaagcgaccccaatatcattttagcattgcctatg |
514 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5534526 |
ccgatcctcaagtttaaataattctctaaatgaacaattattctaatttgtatccaaataaagcgaccccaatatcattttagcattgcctatg |
5534433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 35198759 - 35198799
Alignment:
| Q |
259 |
aaagatgtttttattatcttcgtcaacatatacaaaaacac |
299 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35198759 |
aaagatgtttttattatcttcgtcaacatgtacaaaaacac |
35198799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 19234294 - 19234254
Alignment:
| Q |
259 |
aaagatgtttttattatcttcgtcaacatatacaaaaacac |
299 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||| |
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| T |
19234294 |
aaagatgtttttattatcttcgtcaacttgtacaaaaacac |
19234254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 19235871 - 19235838
Alignment:
| Q |
266 |
tttttattatcttcgtcaacatatacaaaaacac |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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|
| T |
19235871 |
tttttattatcttcgtcaacatgtacaaaaacac |
19235838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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