View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_4 (Length: 838)

Name: NF1498_high_4
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_4
NF1498_high_4
[»] chr1 (24 HSPs)
chr1 (80-369)||(13997835-13998126)
chr1 (393-613)||(13998123-13998350)
chr1 (115-181)||(1864878-1864944)
chr1 (140-244)||(38078596-38078700)
chr1 (140-217)||(5898228-5898305)
chr1 (119-175)||(34257914-34257970)
chr1 (140-238)||(51410045-51410143)
chr1 (116-177)||(2784552-2784613)
chr1 (128-217)||(40181879-40181968)
chr1 (128-216)||(1815265-1815353)
chr1 (125-221)||(28674805-28674901)
chr1 (118-194)||(36878459-36878535)
chr1 (114-238)||(40258874-40258998)
chr1 (133-177)||(44482243-44482287)
chr1 (125-177)||(52903254-52903306)
chr1 (118-177)||(2896123-2896182)
chr1 (118-177)||(6415003-6415062)
chr1 (138-177)||(30749858-30749897)
chr1 (138-177)||(30771309-30771348)
chr1 (138-177)||(34371731-34371770)
chr1 (134-177)||(48148039-48148082)
chr1 (138-180)||(10233271-10233313)
chr1 (128-177)||(7918213-7918262)
chr1 (128-177)||(13436466-13436515)
[»] chr3 (21 HSPs)
chr3 (80-359)||(3962613-3962900)
chr3 (393-580)||(3962424-3962611)
chr3 (112-177)||(7614417-7614482)
chr3 (140-238)||(40993276-40993374)
chr3 (140-194)||(18426969-18427023)
chr3 (113-177)||(7928443-7928507)
chr3 (126-194)||(25093508-25093576)
chr3 (115-173)||(11658810-11658868)
chr3 (133-190)||(8789539-8789596)
chr3 (140-217)||(20503485-20503562)
chr3 (140-201)||(24633379-24633440)
chr3 (115-167)||(16192762-16192814)
chr3 (118-177)||(32429382-32429441)
chr3 (133-171)||(4469863-4469901)
chr3 (139-193)||(8842348-8842402)
chr3 (128-170)||(29112289-29112331)
chr3 (118-172)||(32804547-32804601)
chr3 (128-194)||(45451561-45451627)
chr3 (144-209)||(3631708-3631773)
chr3 (138-175)||(10690266-10690303)
chr3 (140-217)||(26492167-26492244)
[»] chr8 (22 HSPs)
chr8 (118-188)||(4786329-4786399)
chr8 (126-219)||(33405344-33405437)
chr8 (126-179)||(11803265-11803318)
chr8 (128-177)||(14134707-14134756)
chr8 (128-184)||(7658471-7658527)
chr8 (114-217)||(3025545-3025648)
chr8 (742-794)||(32734266-32734318)
chr8 (126-177)||(11927088-11927139)
chr8 (140-179)||(22493514-22493553)
chr8 (138-177)||(26902177-26902216)
chr8 (140-219)||(31557016-31557095)
chr8 (126-193)||(31580113-31580180)
chr8 (121-175)||(34222948-34223002)
chr8 (119-173)||(34897084-34897138)
chr8 (115-176)||(4611529-4611590)
chr8 (128-177)||(12985400-12985449)
chr8 (128-177)||(13844598-13844647)
chr8 (128-177)||(18964185-18964234)
chr8 (128-177)||(33382021-33382070)
chr8 (133-194)||(38079012-38079073)
chr8 (121-194)||(38278160-38278233)
chr8 (133-194)||(40332204-40332265)
[»] chr2 (14 HSPs)
chr2 (115-224)||(31808072-31808181)
chr2 (128-191)||(5367200-5367263)
chr2 (128-194)||(20242712-20242778)
chr2 (131-177)||(38355889-38355935)
chr2 (140-217)||(2438681-2438758)
chr2 (115-176)||(23718021-23718082)
chr2 (115-176)||(24105693-24105754)
chr2 (118-173)||(37411250-37411305)
chr2 (125-180)||(39279680-39279735)
chr2 (114-177)||(44860314-44860377)
chr2 (126-216)||(30404813-30404903)
chr2 (118-167)||(21616760-21616809)
chr2 (128-177)||(31026703-31026752)
chr2 (128-177)||(34784984-34785033)
[»] chr6 (19 HSPs)
chr6 (118-194)||(9658877-9658953)
chr6 (133-213)||(13364671-13364751)
chr6 (118-193)||(19040350-19040425)
chr6 (128-194)||(32511651-32511717)
chr6 (115-194)||(31579212-31579289)
chr6 (128-194)||(7265578-7265644)
chr6 (720-794)||(32462906-32462980)
chr6 (114-171)||(5462680-5462737)
chr6 (128-177)||(9025496-9025545)
chr6 (128-177)||(19044472-19044521)
chr6 (133-177)||(14796192-14796236)
chr6 (118-177)||(5732512-5732571)
chr6 (133-188)||(7377992-7378047)
chr6 (140-219)||(32978859-32978938)
chr6 (140-177)||(7027262-7027299)
chr6 (128-177)||(7086803-7086852)
chr6 (128-177)||(9617442-9617491)
chr6 (128-177)||(11784218-11784267)
chr6 (140-201)||(26314612-26314673)
[»] chr5 (19 HSPs)
chr5 (118-238)||(28588615-28588735)
chr5 (128-194)||(30502373-30502439)
chr5 (128-194)||(30542716-30542782)
chr5 (115-194)||(23012393-23012471)
chr5 (120-179)||(23015989-23016048)
chr5 (115-177)||(12927649-12927711)
chr5 (133-194)||(18421826-18421887)
chr5 (133-201)||(21194101-21194169)
chr5 (138-194)||(42029770-42029826)
chr5 (118-177)||(3966501-3966560)
chr5 (128-194)||(17123056-17123122)
chr5 (119-181)||(23220982-23221044)
chr5 (125-175)||(30098331-30098381)
chr5 (128-177)||(6471891-6471940)
chr5 (128-177)||(17925174-17925223)
chr5 (128-177)||(22423814-22423863)
chr5 (118-215)||(27932233-27932330)
chr5 (138-175)||(39758290-39758327)
chr5 (128-173)||(41091263-41091308)
[»] chr7 (19 HSPs)
chr7 (120-238)||(21880152-21880270)
chr7 (138-200)||(39138462-39138524)
chr7 (140-220)||(41020516-41020596)
chr7 (115-194)||(20549786-20549865)
chr7 (118-177)||(22602712-22602771)
chr7 (117-188)||(27093404-27093475)
chr7 (117-188)||(27184826-27184897)
chr7 (120-175)||(27732243-27732298)
chr7 (133-215)||(3554470-3554552)
chr7 (115-177)||(9482929-9482991)
chr7 (141-190)||(640134-640183)
chr7 (711-800)||(9605775-9605864)
chr7 (711-800)||(9833346-9833435)
chr7 (118-215)||(15680807-15680904)
chr7 (118-174)||(26329387-26329443)
chr7 (128-178)||(17851439-17851489)
chr7 (128-173)||(12278843-12278888)
chr7 (138-187)||(18213025-18213074)
chr7 (128-177)||(23849460-23849509)
[»] chr4 (16 HSPs)
chr4 (140-234)||(40179581-40179675)
chr4 (112-188)||(8423709-8423785)
chr4 (115-238)||(23861370-23861495)
chr4 (140-194)||(29205464-29205518)
chr4 (140-238)||(36509033-36509131)
chr4 (115-167)||(903917-903969)
chr4 (119-167)||(22440612-22440660)
chr4 (749-808)||(2365346-2365405)
chr4 (128-171)||(30522923-30522966)
chr4 (138-177)||(46160914-46160953)
chr4 (127-177)||(5775360-5775410)
chr4 (140-194)||(54580008-54580062)
chr4 (140-217)||(12797300-12797377)
chr4 (118-191)||(21539855-21539928)
chr4 (140-201)||(35157963-35158024)
chr4 (140-201)||(49431046-49431107)
[»] scaffold0110 (1 HSPs)
scaffold0110 (118-179)||(28848-28909)
[»] scaffold0022 (1 HSPs)
scaffold0022 (127-219)||(90850-90942)
[»] scaffold0050 (1 HSPs)
scaffold0050 (126-217)||(70284-70375)
[»] scaffold0123 (1 HSPs)
scaffold0123 (133-175)||(44529-44571)
[»] scaffold0020 (1 HSPs)
scaffold0020 (115-177)||(135314-135376)
[»] scaffold0036 (1 HSPs)
scaffold0036 (128-177)||(9749-9798)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 80 - 369
Target Start/End: Original strand, 13997835 - 13998126
Alignment:
Q  80 cacccatgaaggataaatacggacatggataccagacac--------cgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgt 171  Q
    ||||||||||||| |||||||||||||||||||||||||        ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||    
T  13997835 cacccatgaaggacaaatacggacatggataccagacactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgt 13997934  T
Q  172 cggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatataatatcacattgtgcttgtgcatcttatactt 271  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||       |||| || |||||||||||||||||||||||||||||||||||||    
T  13997935 cggtgttggagacgacacatgtcaaacaccatgacacgtctaatccaag------tcatactccatataatatcacattgtgcttgtgcatcttatactt 13998028  T
Q  272 tgctgtttaaataatagaaatgaagtgatactaaaaaaggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtggacataactg 369  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13998029 tgctgtttaaataatagaaatgaagtgatactaaaaatggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtggacataactg 13998126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 393 - 613
Target Start/End: Original strand, 13998123 - 13998350
Alignment:
Q  393 actggtacgttttatctgcttgtataaatgcgtgcatgtatca------gtggtattattagtgtactactagcacgttttatctgcttgtttaaaggca 486  Q
    |||||||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13998123 actggtacgttttatctgcttgtataaatgcgtgcatgtatcactatcagtagtattattagtgtactactagcacgttttatctgcttgtttaaaggca 13998222  T
Q  487 gttaatgtgttcattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggatt-aaaaaatac 585  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13998223 gttaatgtgttcattcacattcagattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaaaaatac 13998322  T
Q  586 aataaagtagtataaaaagatgtcattt 613  Q
    |||||||||||||||||| |||||||||    
T  13998323 aataaagtagtataaaaatatgtcattt 13998350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 1864944 - 1864878
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttgga 181  Q
    |||||||||  |||||| |||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  1864944 acaccgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttgga 1864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 38078700 - 38078596
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatat 239  Q
    |||||||||||||||| ||| |||| |  ||||||||| ||| |||||||||||  ||||||| |||||| ||||||| |  ||||||| |||||||||     
T  38078700 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T
Q  240 aatat 244  Q
    |||||    
T  38078600 aatat 38078596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 5898305 - 5898228
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||||||||||||||||||| |||||||  ||||||||  || ||||||| |||| ||||||  ||||||||||||||    
T  5898305 aaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatcc 5898228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 34257970 - 34257914
Alignment:
Q  119 cgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggt 175  Q
    ||||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||||    
T  34257970 cgacaccgttaataatttaataaaatcacataatttagtgtaattatatatgtcggt 34257914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 51410045 - 51410143
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcata 238  Q
    |||||||||||||||||||| |||| |  ||||||||| ||| ||||||| | ||  |||||  |||||| |||||||||  ||||||| |||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcata 51410143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 2784552 - 2784613
Alignment:
Q  116 caccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||| ||||||  ||||||||||||||||||||| ||| | ||||||| |||||||||    
T  2784552 caccgacaccgttaaaaatttaagaaaatcacataattgagtataattatatgtgtcggtgt 2784613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 40181879 - 40181968
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||| |||| |||||||||||||||||||||| ||||||| | ||||||| ||| || |||| ||||  |||||  |||||| |||||||    
T  40181879 taataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatcc 40181968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 1815265 - 1815353
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatc 216  Q
    ||||||||| | |||||||||||||||||||| |||| |  |||||||||  || ||||||||||||  |||||  |||||| ||||||    
T  1815265 taattattttaaaaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatc 1815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 28674805 - 28674901
Alignment:
Q  125 cgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaa 221  Q
    ||||||| |||| ||||||| |||||||||||| | ||||||||||| |||||  || ||||||| |||| |||||   |||||| |||||| ||||    
T  28674805 cgttaataatttgagaaaattacataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatctaaaa 28674901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 36878459 - 36878535
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||| || |||| |||| |||||||||||||||||||||| ||||||  |||||||||  || |||| |||||||    
T  36878459 ccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtc 36878535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 40258998 - 40258874
Alignment:
Q  114 gacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtcta 213  Q
    ||||||||||   ||||| |||| | |||||||||||||||||||| |||| |  |||||||||  || ||||||| ||||  |||||| |||||| |||    
T  40258998 gacaccgacacaattaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgccta 40258899  T
Q  214 atccaaaaagtattcatgcttcata 238  Q
    |||| |  ||| | |||||||||||    
T  40258898 atccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 44482243 - 44482287
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||    
T  44482243 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 44482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 52903254 - 52903306
Alignment:
Q  125 cgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||||| |||||| ||||||| |||||||||||| ||||||| |||||||||    
T  52903254 cgttaataatttaataaaatcatataattcagtgtaattatatgtgtcggtgt 52903306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 2896182 - 2896123
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| || |||| |||| ||||||||||||||||||||||   |||||||||||||||    
T  2896182 ccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgt 2896123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 6415062 - 6415003
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||||||| ||||||||| ||||||||||||||| |||| | |||| || |||||||||    
T  6415062 ccgacatcgctaattatttgagaaaatcacataatacagtttaattagatgtgtcggtgt 6415003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 30749858 - 30749897
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgt 30749897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 30771309 - 30771348
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgt 30771348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 34371731 - 34371770
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgt 34371770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 48148082 - 48148039
Alignment:
Q  134 tttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||    
T  48148082 tttaaaaaaatcatataattcagtgtaattatatatgtcggtgt 48148039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 10233271 - 10233313
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgttgg 180  Q
    |||||||||||||||||||||| ||||||| |||| |||||||    
T  10233271 agaaaatcacataattcagtgtaattatatgtgtctgtgttgg 10233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 7918262 - 7918213
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||| ||||    
T  7918262 taataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgt 7918213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 13436466 - 13436515
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| ||||||| ||||||||||||||||||| ||||||| ||| |||||    
T  13436466 taataatttaaggaaatcacataattcagtgtaattatatgtgttggtgt 13436515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 80 - 359
Target Start/End: Complemental strand, 3962900 - 3962613
Alignment:
Q  80 cacccatgaaggataaatacggacatggataccagacaccgacat--------cgttaattatttaagaaaatcacataattcagtgttattatatatgt 171  Q
    |||||||||| || ||||||||||||||||||||||||||||||         | |||||||||||||||||| |||||| ||||||||||||||| |||    
T  3962900 cacccatgaaagacaaatacggacatggataccagacaccgacactccgacacccttaattatttaagaaaataacataactcagtgttattatatgtgt 3962801  T
Q  172 cggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatataatatcacattgtgcttgtgcatcttatactt 271  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  3962800 cggtgttggatacgacgcatgtcaaacaccatgacacgtttaatccaagaagtattcatactccatataatatcacattgtgcttgtgcatcttatactt 3962701  T
Q  272 tgctgtttaaataatagaaatgaagtgatactaaaaaaggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtg 359  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962700 tgctgtttaaataatagaaatgaattgatactaaaaatggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtg 3962613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 393 - 580
Target Start/End: Complemental strand, 3962611 - 3962424
Alignment:
Q  393 actggtacgttttatctgcttgtataaatgcgtgcatgtatcagtggtattattagtgtactactagcacgttttatctgcttgtttaaaggcagttaat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3962611 actggtacgttttatctgcttgtataaatgcgtgcatgtatcagtagtattattactgtactactagcacgttttatctgcttgtttaaaggcagttaat 3962512  T
Q  493 gtgttcattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaa 580  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  3962511 gtgttcattcacattcatattgagatgctgaaaaatgaactacttcctccatttcaaataagtgaaggttgttgtacacggatcaaaa 3962424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 7614482 - 7614417
Alignment:
Q  112 cagacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  7614482 cagacaccgacacagttaataatttaagaaaatcacataattcagtataattatatatgtcggtgt 7614417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 40993374 - 40993276
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcata 238  Q
    |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||  |||||  |||||| ||||||| |  ||| | |||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcata 40993276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 18426969 - 18427023
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||    
T  18426969 aaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtc 18427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 7928443 - 7928507
Alignment:
Q  113 agacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||||||||| || |||| |||| | |||||||||||||||||||| ||||||| |||||||||    
T  7928443 agacaccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 25093508 - 25093576
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||| |||| ||||||||||| |||||||||| ||||||| ||||||||| ||| || |||||||||    
T  25093508 gttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtc 25093576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 11658810 - 11658868
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcg 173  Q
    ||||| ||||||||||| |||| |||||||| ||||||||||||| ||||||| |||||    
T  11658810 acaccaacatcgttaataatttgagaaaatcgcataattcagtgtgattatatgtgtcg 11658868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 8789596 - 8789539
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacaca 190  Q
    |||| ||||||||||||||||| |||| ||||||| ||||||||| ||| ||||||||    
T  8789596 atttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacaca 8789539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 20503485 - 20503562
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    ||||| |||||||||||||| |||| |  ||||||||||||| ||||||||||||  |||||  |||||| |||||||    
T  20503485 aaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatcc 20503562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 24633440 - 24633379
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacacc 201  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||| ||||||| |||| ||||||    
T  24633440 aaaatcacgtaattcaatgtaattatatgtgtcggtgttggacacgacacttgtctaacacc 24633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 16192814 - 16192762
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatat 167  Q
    ||||||||| ||||||| |||| ||||||| |||||||||||||| |||||||    
T  16192814 acaccgacaccgttaataatttgagaaaataacataattcagtgtaattatat 16192762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 32429441 - 32429382
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| || |||| ||||||||||||||||||||||||||  |||||| || |||||||    
T  32429441 ccgacaacgctaataatttaagaaaatcacataattcagtgcaattataaatatcggtgt 32429382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 4469863 - 4469901
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgt 171  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  4469863 atttaagaaaatcacataattcagtgtaagtatatatgt 4469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 8842348 - 8842402
Alignment:
Q  139 gaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgt 193  Q
    |||||||||||||||  |||| |||||||||||||||||  || |||||||||||    
T  8842348 gaaaatcacataatttggtgtaattatatatgtcggtgtcagacacgacacatgt 8842402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 29112331 - 29112289
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatg 170  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||    
T  29112331 taattatttgagaaaatcatataattcagtgtaattatatatg 29112289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 32804601 - 32804547
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtc 172  Q
    |||||| ||||||| |||| |||||||||||||||| ||||| ||||||| ||||    
T  32804601 ccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 45451561 - 45451627
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||| ||||||||||||| |||||| | || |||| ||||||||| ||| ||||||||||||    
T  45451561 taataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtc 45451627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 3631708 - 3631773
Alignment:
Q  144 tcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacg 209  Q
    |||||||||||||||| ||||||| || | |||| ||| ||||||||||||  |||||| ||||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacg 3631773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 10690303 - 10690266
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggt 175  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  10690303 agaaaatcacataattcagtgtaattatatttgtcggt 10690266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 26492244 - 26492167
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    ||||||| | |||||||||| |||| |  | ||||||| ||| ||||||||||||  |||||| ||||||||||||||    
T  26492244 aaaatcatacaattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtctaatcc 26492167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 4786399 - 4786329
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgaca 188  Q
    |||||| | ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  4786399 ccgacaccattaataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcggatacgaca 4786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 33405437 - 33405344
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaa 219  Q
    |||||| |||| |||||| ||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||  |||||  |||||| |||||||||    
T  33405437 gttaataatttgagaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaa 33405344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 11803265 - 11803318
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttg 179  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  11803265 gttaataatttaagaaaatcacataattcagtgtaattatatgtgttggtgttg 11803318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 14134707 - 14134756
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgt 14134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 7658471 - 7658527
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatac 184  Q
    |||| |||| ||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattatatttgtcggtgttggatac 7658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 3025545 - 3025648
Alignment:
Q  114 gacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtcta 213  Q
    ||||||| ||| | |||| |||| |||||||||||||||||||||| ||||||  |||| |||| ||| ||||||| ||||  ||||  ||||||| |||    
T  3025545 gacaccggcattgctaataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggcta 3025644  T
Q  214 atcc 217  Q
    ||||    
T  3025645 atcc 3025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 794
Target Start/End: Complemental strand, 32734318 - 32734266
Alignment:
Q  742 tatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc 794  Q
    |||||||||||||||| |||| | ||||| ||||||||||||||||| |||||    
T  32734318 tatttataggaacatgctattgaatttgcttatttatcaggcggtttacgagc 32734266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 11927139 - 11927088
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| |||| | |||||||||||||||||||| ||||||| |||||||||    
T  11927139 gttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgt 11927088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 22493514 - 22493553
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttg 179  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  22493514 aaaatcacataattcagtgtaatcatatatgtcggtgttg 22493553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 26902216 - 26902177
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgt 26902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 31557016 - 31557095
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaa 219  Q
    |||||||||||||||||||| |||| |  | |||||||  || ||||||||||||  |||||| |||||| |||||||||    
T  31557016 aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatccaa 31557095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 31580180 - 31580113
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgt 193  Q
    |||||| ||||||||||||||||||||| ||||| ||||||  ||||| ||| |||  ||||||||||    
T  31580180 gttaataatttaagaaaatcacataattgagtgtaattataggtgtcgatgtcggacgcgacacatgt 31580113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 34222948 - 34223002
Alignment:
Q  121 acatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggt 175  Q
    |||||| |||| |||||| |||||||||||||| ||||| ||||||| |||||||    
T  34222948 acatcgctaataatttaataaaatcacataattaagtgtaattatatgtgtcggt 34223002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 34897084 - 34897138
Alignment:
Q  119 cgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcg 173  Q
    ||||| || |||| |||| |||||||||||||||||||||| ||||||| |||||    
T  34897084 cgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 4611529 - 4611590
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtg 176  Q
    ||||||||| || |||| |||| ||||||| |||||||||||||| ||||||| | ||||||    
T  4611529 acaccgacaccgctaataatttgagaaaataacataattcagtgtaattatatgtctcggtg 4611590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 12985400 - 12985449
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||| ||| || ||||||||||||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 13844647 - 13844598
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||| ||||| ||||||| |||||||||    
T  13844647 taataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgt 13844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 18964185 - 18964234
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||| ||| |||||||||||||||||| ||| ||||||| |||||||||    
T  18964185 taatttttttagaaaatcacataattcaatgtaattatatgtgtcggtgt 18964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 33382070 - 33382021
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||||||||||| ||||||||||| || ||||||| |||||||||    
T  33382070 taataatttaagaaaatgacataattcagagtaattatatgtgtcggtgt 33382021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 38079012 - 38079073
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    ||||||||||||||||| ||||||||| |||||||  |||| ||| ||| ||||| ||||||    
T  38079012 atttaagaaaatcacatgattcagtgtaattatatgcgtcgatgtcggacacgacgcatgtc 38079073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 38278233 - 38278160
Alignment:
Q  121 acatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||| |||| ||||||||||||||||||||| | | | ||||||  | ||||||||||| |||| |||||||    
T  38278233 acatcgctaataatttaagaaaatcacataatttaatataattatacgtatcggtgttggacacgatacatgtc 38278160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 40332204 - 40332265
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||||||||||||||||||||| |||| |  ||||||||| ||| ||||||| ||||    
T  40332204 atttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtc 40332265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 31808072 - 31808181
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaa 214  Q
    ||||||||| || |||| |||||| |||||||||||||||||||| ||||||| |||| |||||| | |||||||||||   |||||  |||||  ||||    
T  31808072 acaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgtcagtgttgaacacgacacatgttcgacacctggacacacctaa 31808171  T
Q  215 tccaaaaagt 224  Q
    ||||||||||    
T  31808172 tccaaaaagt 31808181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 5367200 - 5367263
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacat 191  Q
    |||| |||| || ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||    
T  5367200 taataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacat 5367263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 20242778 - 20242712
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||| ||| || |||| ||||    
T  20242778 taatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtc 20242712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 38355935 - 38355889
Alignment:
Q  131 ttatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  38355935 ttatttgagaaaatcacataattcagtgtgattatatgtgtcggtgt 38355889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 2438758 - 2438681
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||||||||||||||||||| |||| |  ||||||||| ||| ||||||||||||  |||||  |||||| |||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatcc 2438681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 23718021 - 23718082
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtg 176  Q
    ||||||||| || |||| |||| ||||| |||||||||||||||| ||||||| ||||||||    
T  23718021 acaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtg 23718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 24105693 - 24105754
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtg 176  Q
    ||||||||| || |||| |||| ||||| |||||||||||||||| ||||||| ||||||||    
T  24105693 acaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 37411305 - 37411250
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcg 173  Q
    |||||| || |||| |||| |||||||||||||||||||||| ||||||| |||||    
T  37411305 ccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtcg 37411250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 39279680 - 39279735
Alignment:
Q  125 cgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttgg 180  Q
    ||||||| || | ||||||||| |||||||||||| ||||||| ||||||||||||    
T  39279680 cgttaataatatgagaaaatcaaataattcagtgtaattatatgtgtcggtgttgg 39279735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 44860314 - 44860377
Alignment:
Q  114 gacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||| |||| || |||| |||| |||||||| ||||||||||||| ||||||| |||||||||    
T  44860314 gacactgacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgt 44860377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 30404903 - 30404813
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatc 216  Q
    |||||| |||| | |||||||||||||||||||| |||| |  |||||| || ||| ||||||||||||  |||||| |||| | ||||||    
T  30404903 gttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatc 30404813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 21616760 - 21616809
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatat 167  Q
    |||||| || |||| |||| |||||||||||||||||||||| |||||||    
T  21616760 ccgacaccgctaataatttgagaaaatcacataattcagtgtaattatat 21616809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 31026703 - 31026752
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||||||||||| |||||||||| ||| || ||||||||||||||    
T  31026703 taataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 34785033 - 34784984
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||| ||| |||||||||||||||| ||||| ||||||| |||||||||    
T  34785033 taatttttttagaaaatcacataatttagtgtaattatatgtgtcggtgt 34784984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 9658877 - 9658953
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||| ||||    
T  9658877 ccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtc 9658953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 13364751 - 13364671
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtcta 213  Q
    |||| ||||||||| |||||||||||| || |||| ||||||||||||| |||| |||||||  |||||| ||||||||||    
T  13364751 atttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtctgacaccaggacacgtcta 13364671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 19040350 - 19040425
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgt 193  Q
    |||||| || |||| |||| |||||||||||||||||||||| ||||||| |||| |||| ||| |||||||||||    
T  19040350 ccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacacatgt 19040425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 32511717 - 32511651
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| ||||||||||||||||||||||||||| ||||||  ||| ||||| |||||||||| |||||    
T  32511717 taataatttaagaaaatcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtc 32511651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 31579289 - 31579212
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    ||||| ||| ||||||| |||| |||||||||||||||||||||| ||  ||| ||||||||| ||| ||||||||||||    
T  31579289 acaccaacaccgttaataatttgagaaaatcacataattcagtgtaat--tatgtgtcggtgtcggacacgacacatgtc 31579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 7265644 - 7265578
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||| |||||||||||||||||||||| ||||||| ||||||||| ||| || | |||||||    
T  7265644 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtc 7265578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 720 - 794
Target Start/End: Original strand, 32462906 - 32462980
Alignment:
Q  720 catttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc 794  Q
    ||||| ||| |||||| |||  |||||| | ||||||| |||||| ||||| |||||||||||||||||||||||    
T  32462906 catttgttccgctgatctgtactatttacaagaacatgctattcaatttgcttatttatcaggcggtttgcgagc 32462980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 5462680 - 5462737
Alignment:
Q  114 gacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgt 171  Q
    ||||| |||| ||||||| |||| |||||||||||||||||| ||| |||||||||||    
T  5462680 gacactgacaccgttaataatttgagaaaatcacataattcattgtaattatatatgt 5462737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 9025545 - 9025496
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 9025496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 19044472 - 19044521
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||| ||||||||||||||||||||||||| |||||||||    
T  19044472 taataatttgagaatatcacataattcagtgttattatatgtgtcggtgt 19044521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 14796236 - 14796192
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||||||| |  |||||||||||||||||    
T  14796236 atttaagaaaatcacataattcagcgcaattatatatgtcggtgt 14796192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 5732571 - 5732512
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| ||||||| |||| ||||||||||||| || ||||| ||||||| |||||||||    
T  5732571 ccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgt 5732512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 7377992 - 7378047
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgaca 188  Q
    |||| |||||||||||||||||| ||| ||||||| ||||||||| ||| ||||||    
T  7377992 atttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 32978938 - 32978859
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaa 219  Q
    |||| ||||||||| ||||| |||| |  ||||||||| ||| ||||||||||||  |||||  ||||||||||||||||    
T  32978938 aaaaacacataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaa 32978859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 7027262 - 7027299
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  7027262 aaaatcacataattcagtgtaattatatgtgtcggtgt 7027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 7086803 - 7086852
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||| ||||| ||||||| |||||||||    
T  7086803 taataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgt 7086852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 9617442 - 9617491
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||| ||| ||||||| |||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 11784267 - 11784218
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||| | ||||||| |||||||||||||||||    
T  11784267 taataatttgagaaaatcacatgaatcagtgtaattatatatgtcggtgt 11784218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 26314673 - 26314612
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacacc 201  Q
    ||||||| |||||||| ||| |||||||||||||| ||  |||||||||| |||| ||||||    
T  26314673 aaaatcatataattcaatgtaattatatatgtcggggtcagatacgacacttgtccaacacc 26314612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 28588735 - 28588615
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||||| || |||| |||| |||||||||||||||||||||| ||||||  ||||||||| ||| ||||||||| ||  |||||| ||||||  ||||||    
T  28588735 ccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatcc 28588636  T
Q  218 aaaaagtattcatgcttcata 238  Q
     || ||| | |||||||||||    
T  28588635 gaagagtgtccatgcttcata 28588615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 30502439 - 30502373
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||| |||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  30502439 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtc 30502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 30542782 - 30542716
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||| |||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  30542782 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtc 30542716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 23012471 - 23012393
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||||||| | |||| |||| ||||||||| |||||| | ||| ||||||| ||||||||||||| ||||||||||||    
T  23012471 acaccgacat-gctaataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtc 23012393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 23016048 - 23015989
Alignment:
Q  120 gacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttg 179  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||  ||||| |||||    
T  23016048 gacatcgttaatcatttgagaaaatcacataattcagtgtaattataggtgtcgatgttg 23015989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 12927649 - 12927711
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||| |||| |||| ||||||||| |||||| ||||| |||||||||||| ||||    
T  12927649 acaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtcagtgt 12927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 18421887 - 18421826
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| ||||||||||||||| |||||| ||||||| |||||| || ||| ||||||||||||    
T  18421887 atttgagaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtc 18421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 21194169 - 21194101
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacacc 201  Q
    |||| |||||||||||| ||||||||| ||||||  | | ||||||||| ||||||||||||| |||||    
T  21194169 atttgagaaaatcacatcattcagtgtaattataggtattggtgttggacacgacacatgtcagacacc 21194101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 42029770 - 42029826
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||||||||||||||| ||| ||||||| | ||||||| ||| ||||||||||||    
T  42029770 agaaaatcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtc 42029826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 3966501 - 3966560
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| || |||| |||| ||||||||||| |||||||||| ||||||| |||||||||    
T  3966501 ccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgt 3966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 17123056 - 17123122
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||| |||| |||||||||||||||  |||   ||||||||||||||||||||| |||| |||||||    
T  17123056 taataatttgagaaaatcacataatcaagtacaattatatatgtcggtgttggacacgaaacatgtc 17123122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 23220982 - 23221044
Alignment:
Q  119 cgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttgga 181  Q
    ||||| || |||| |||| | |||||||||||||| |||||||| |||| |||||||||||||    
T  23220982 cgacaccgctaataatttgataaaatcacataatttagtgttatcatatgtgtcggtgttgga 23221044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 30098331 - 30098381
Alignment:
Q  125 cgttaattatttaagaaaatcacataattcagtgttattatatatgtcggt 175  Q
    ||||||| |||| |||||||||||||||||| ||| |||||| ||||||||    
T  30098331 cgttaataatttgagaaaatcacataattcaatgtaattatagatgtcggt 30098381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 6471940 - 6471891
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||||||| ||||||| ||| |||||    
T  6471940 taataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgt 6471891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 17925223 - 17925174
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| ||||||||||||||||||||||| ||| || |||| |||||||||    
T  17925223 taataatttaagaaaatcacataattcaatgtaataatatgtgtcggtgt 17925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 22423863 - 22423814
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||||||||||| | | |||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgt 22423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 27932233 - 27932330
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaat 215  Q
    |||||| || |||| |||| ||||||| |||||||||||||| |||| | || | ||||| ||| ||||||| ||||  |||||| |||||| |||||    
T  27932233 ccgacaccgctaataatttgagaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaat 27932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 39758290 - 39758327
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggt 175  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  39758290 agaaaatcacataattcagtgtaattatatgtgtcggt 39758327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 41091308 - 41091263
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcg 173  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||||    
T  41091308 taatgatttgagaaaatcacataattcagtgtaattatatgtgtcg 41091263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 21880152 - 21880270
Alignment:
Q  120 gacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaa 219  Q
    ||||||| |||| |||| ||||||| |||||||||||||| |||| |  ||||||||| ||| ||||||||||||  |||||| |||||| ||||||| |    
T  21880152 gacatcgctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccga 21880251  T
Q  220 aaagtattcatgcttcata 238  Q
     |||| | | |||||||||    
T  21880252 gaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 39138462 - 39138524
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacac 200  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||| |||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacac 39138524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 41020516 - 41020596
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaa 220  Q
    |||||||||||||| ||||| |||||||  |||||||||| | ||||||||| || ||||||  |||||||||||||||||    
T  41020516 aaaatcacataatttagtgtaattatatgcgtcggtgttgaacacgacacatatctaacaccgggacacgtctaatccaaa 41020596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 20549786 - 20549865
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    ||||||||| || |||| |||| |||||||||| ||||||||||| ||||||| ||||||||| ||| || |||||||||    
T  20549786 acaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtc 20549865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 22602771 - 22602712
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||| ||| |||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  22602771 ccgacaccgtaaattatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 22602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 27093475 - 27093404
Alignment:
Q  117 accgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgaca 188  Q
    ||||||| || |||| ||||||||||||||||||||| ||||| |||||||  ||||||||| || ||||||    
T  27093475 accgacaccgctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27093404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 27184826 - 27184897
Alignment:
Q  117 accgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgaca 188  Q
    ||||||| || |||| ||||||||||||||||||||| ||||| |||||||  ||||||||| || ||||||    
T  27184826 accgacaccgctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27184897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 27732298 - 27732243
Alignment:
Q  120 gacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggt 175  Q
    |||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||    
T  27732298 gacaacgttaataatttaagaaaattacataattcagtgtaattatatgtgtcggt 27732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 3554552 - 3554470
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaat 215  Q
    |||||||||||| |||||||| | ||| |||||| |||||||||| ||| ||||||||| || |||||   ||||||||||||    
T  3554552 atttaagaaaattacataatttaatgtaattatagatgtcggtgtcggacacgacacatatctaacactgagacacgtctaat 3554470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 9482929 - 9482991
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||||| | || |||| ||||||||||| |||||||||| ||||||| |||||||||    
T  9482929 acaccgacatcgctgataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgt 9482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 640134 - 640183
Alignment:
Q  141 aaatcacataattcagtgttattatatatgtcggtgttggatacgacaca 190  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgtcagatacgacaca 640183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 800
Target Start/End: Original strand, 9605775 - 9605864
Alignment:
Q  711 ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg 800  Q
    |||| ||| ||||| ||| ||||||  || ||||||| || |||||| |||||||||||| |||||||||||| |||||| ||| |||||    
T  9605775 ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg 9605864  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 800
Target Start/End: Original strand, 9833346 - 9833435
Alignment:
Q  711 ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg 800  Q
    |||| ||| ||||| ||| ||||||  || ||||||| || |||||| |||||||||||| |||||||||||| |||||| ||| |||||    
T  9833346 ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg 9833435  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 15680807 - 15680904
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaat 215  Q
    ||||||| | |||| ||| || |||||||||||||| ||||| ||||||  ||||||||| ||| ||||||| ||||  |||||  ||||||||||||    
T  15680807 ccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaat 15680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 26329443 - 26329387
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcgg 174  Q
    |||||||||||||| |||| |||||| |||| |||||||||| ||||||| ||||||    
T  26329443 ccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcgg 26329387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 17851439 - 17851489
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgtt 178  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||| |||||    
T  17851439 taataattttagaaaatcacataattcagtgtaattatatgtgtctgtgtt 17851489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 12278843 - 12278888
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcg 173  Q
    |||| |||||||||||| |||||||||||||| ||||||| |||||    
T  12278843 taataatttaagaaaatgacataattcagtgtaattatatgtgtcg 12278888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 18213074 - 18213025
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgttggatacgac 187  Q
    |||||||||||||||| ||||| ||||||| ||||||||| ||| |||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcggacacgac 18213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 23849509 - 23849460
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| ||||||||||| ||||||||||||| | ||||||| |||||||||    
T  23849509 taataatttaagaaaaacacataattcagtataattatatgtgtcggtgt 23849460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 40179675 - 40179581
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgctt 234  Q
    |||||||||||||||||||| |||||||  |||||||| ||| |||||||||||   ||||||||||||| ||||||| | || ||||| |||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaattattcgtgctt 40179581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 8423785 - 8423709
Alignment:
Q  112 cagacaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgaca 188  Q
    |||| ||||||| || |||| |||| |||||||||||||||||||||| |||||| |||||||||| ||| ||||||    
T  8423785 cagataccgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgaca 8423709  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 23861495 - 23861370
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgt--cggtgttggatacgacacatgtcaaacaccatgacacgtct 212  Q
    ||||||||| || |||| | || | |||||||||| ||||| ||| |||||||||||  ||||||  |||||||||||||||   ||||| |||||| ||    
T  23861495 acaccgacaccgctaataaattgataaaatcacatgattcaatgtaattatatatgtgtcggtgtcagatacgacacatgtctgtcaccaagacacgcct 23861396  T
Q  213 aatccaaaaagtattcatgcttcata 238  Q
    ||| |||| ||| ||| |||||||||    
T  23861395 aattcaaagagtgttcgtgcttcata 23861370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 29205464 - 29205518
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||||||||||||||||| |||| |  ||||||||||||| ||||||||||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtc 29205518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 36509131 - 36509033
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcata 238  Q
    |||||||||||||  ||||| ||||||| |||||| || |||  |||||| ||||  | |||| ||||||| |||||| | ||||||||||||||||||    
T  36509131 aaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctgataccaggacacgtttaatccgagaagtattcatgcttcata 36509033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 903917 - 903969
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatat 167  Q
    |||||| || ||||||| |||| |||||||||||||||||||||| |||||||    
T  903917 acaccggcaccgttaataatttgagaaaatcacataattcagtgtaattatat 903969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 22440660 - 22440612
Alignment:
Q  119 cgacatcgttaattatttaagaaaatcacataattcagtgttattatat 167  Q
    ||||| ||||||| |||| |||||||||||||||||||||| |||||||    
T  22440660 cgacaccgttaataatttgagaaaatcacataattcagtgtaattatat 22440612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 808
Target Start/End: Complemental strand, 2365405 - 2365346
Alignment:
Q  749 aggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcgtacttttt 808  Q
    |||| |||| |||||||||||| |||| |||||| |||||| ||||||||||| ||||||    
T  2365405 aggagcatgctattcagtttgcttattcatcaggaggtttgagagctcgtcgttcttttt 2365346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 30522966 - 30522923
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgt 171  Q
    ||||||||| |||||||||||||||||||||| | |||||||||    
T  30522966 taattatttgagaaaatcacataattcagtgtaactatatatgt 30522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 46160914 - 46160953
Alignment:
Q  138 agaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  46160914 agaaaataacataattcagtgttattatatgtgtcggtgt 46160953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 5775410 - 5775360
Alignment:
Q  127 ttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    ||||| |||| |||||||||||||||| ||||| ||||||| |||||||||    
T  5775410 ttaataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgt 5775360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 54580062 - 54580008
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtc 194  Q
    |||||||||||||||||||| ||||||  ||||||||| ||| ||||||| ||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 12797377 - 12797300
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||||||||||||||||||| |||| |  ||||||||| ||| |||| |||||||  |||||  |||| |||||||||    
T  12797377 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggacaagtctaatcc 12797300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 21539928 - 21539855
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacat 191  Q
    |||||| | ||||| |||||||||||||| |||||| ||||| ||||||||| || ||||  |||| |||||||    
T  21539928 ccgacaccattaataatttaagaaaatcatataatttagtgtaattatatatatccgtgtcagatatgacacat 21539855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 35158024 - 35157963
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacacc 201  Q
    |||||||||||||| ||||| ||||||  |||||||||  || |||||||||||| ||||||    
T  35158024 aaaatcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacacc 35157963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 49431046 - 49431107
Alignment:
Q  140 aaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacacc 201  Q
    |||||||||||||||||||| |||| |  ||||||||| ||| ||||||| |||| ||||||    
T  49431046 aaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacacc 49431107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 28848 - 28909
Alignment:
Q  118 ccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttg 179  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||| ||||||| |||||||||||    
T  28848 ccgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgttg 28909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 90850 - 90942
Alignment:
Q  127 ttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaa 219  Q
    ||||| |||| ||||||||| |||||||||||| ||||||||||||| |||  || || |||| ||||  ||||||  ||||| |||||||||    
T  90850 ttaataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaa 90942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 70284 - 70375
Alignment:
Q  126 gttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatcc 217  Q
    |||||| |||| | ||||| |||||||||||||| ||||||  ||||||||| ||| ||||||| ||||  |||||| |||| | |||||||    
T  70284 gttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatcc 70375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 44571 - 44529
Alignment:
Q  133 atttaagaaaatcacataattcagtgttattatatatgtcggt 175  Q
    |||| |||||||||||||||||||||| ||||||| |||||||    
T  44571 atttgagaaaatcacataattcagtgtaattatatgtgtcggt 44529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 135376 - 135314
Alignment:
Q  115 acaccgacatcgttaattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||||||||  | |||| |||| ||||||||||||||||| |||| ||||||| |||||||||    
T  135376 acaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgt 135314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 9798 - 9749
Alignment:
Q  128 taattatttaagaaaatcacataattcagtgttattatatatgtcggtgt 177  Q
    |||| |||| |||||||||| ||||||||||| ||||||| |||||||||    
T  9798 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgt 9749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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