View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_40 (Length: 516)
Name: NF1498_high_40
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Original strand, 38229784 - 38230247
Alignment:
| Q |
16 |
atcaaacccttcgattctaaattcaaattcatcaactaatcaaacccnnnnnnnctcaaaggtgcgaataaatactcatggtgagtggcttgtggtaaat |
115 |
Q |
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| T |
38229784 |
atcaaacccttcgattctaaattcaaattcatcaactaatcaaacccaaaaaaactcaaaggtgcgaataaatactcatggtgagtggcttgtggtaaat |
38229883 |
T |
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| Q |
116 |
cgtaaaaagaagaaaactccaccaattacagtgaagaaaaaatagatgggacaattaattagaaattcaaaaaacttgggtgcattcaagttgcaattaa |
215 |
Q |
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| T |
38229884 |
cgtaaaaagaagaaaactccaccaattacagtgaagaaaaaatagatgggacaattaattagaaactcaaaaaacttgggtgcattcaagttgcaattaa |
38229983 |
T |
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| Q |
216 |
aggaggaattaagtcaaatgataattatgaagaaggaagggataaggcgcaaatcatgtccgatggaggaagtgagaaaccacaaaaaacgtggtgatgt |
315 |
Q |
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| T |
38229984 |
aggaggaattaagtcaaatgataattatgaagaaggaagggataaggcgcaaatcatgtccgatggaggaagtgagaaaccacaaaaaacgtggtgatgt |
38230083 |
T |
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| Q |
316 |
ggaaccacaatagcagaattttatggaacaccgcgccggagttctactcagccgcgccggtgttctcaaccttccattattttttgtttgaaattgattt |
415 |
Q |
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| T |
38230084 |
ggaaccacaatagcagaattttatggaacaccgcgccg---------------------gtgttctcaaccttccattattttttgtttgaaattgattt |
38230162 |
T |
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| Q |
416 |
ttctaatctagatctggatgaaaaatagaggaagaaagagaagcgatggaagaggtgacggtggccgtgttttacataaagggtg |
500 |
Q |
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| T |
38230163 |
ttctaatctagatctggatgaaaaatagaggaagaaagagaagcgattgaagaggtgacggtggccgtgttttacataaagggtg |
38230247 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 470
Target Start/End: Original strand, 10155870 - 10155958
Alignment:
| Q |
382 |
caaccttccattattttttgtttgaaattgatttttctaatctagatctggatgaaaaatagaggaagaaagagaagcgatggaagagg |
470 |
Q |
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|||| |||||||||||||||||||||||||||||| | ||||||||| | |||||||||| | ||||| |||||||||||||||||| |
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| T |
10155870 |
caacattccattattttttgtttgaaattgattttccggatctagatccagctgaaaaatagtgcaagaaggagaagcgatggaagagg |
10155958 |
T |
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