View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_41 (Length: 515)

Name: NF1498_high_41
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_41
NF1498_high_41
[»] chr2 (4 HSPs)
chr2 (12-497)||(36281654-36282147)
chr2 (49-107)||(34784965-34785023)
chr2 (48-106)||(18889575-18889633)
chr2 (48-96)||(29970543-29970591)
[»] chr7 (1 HSPs)
chr7 (51-107)||(15902842-15902898)
[»] chr4 (4 HSPs)
chr4 (49-94)||(13134468-13134513)
chr4 (52-107)||(46083974-46084029)
chr4 (48-80)||(10499280-10499312)
chr4 (48-80)||(33950153-33950185)
[»] chr6 (5 HSPs)
chr6 (48-108)||(26562706-26562766)
chr6 (48-94)||(7086812-7086858)
chr6 (51-85)||(10842552-10842586)
chr6 (51-89)||(26178682-26178720)
chr6 (48-84)||(13360378-13360414)
[»] chr1 (3 HSPs)
chr1 (48-107)||(44482247-44482306)
chr1 (48-94)||(20157346-20157392)
chr1 (48-80)||(14332652-14332684)
[»] chr5 (2 HSPs)
chr5 (48-94)||(41091253-41091299)
chr5 (48-81)||(2577189-2577222)
[»] chr8 (4 HSPs)
chr8 (51-107)||(2572039-2572095)
chr8 (48-80)||(14731729-14731761)
chr8 (48-88)||(34897102-34897142)
chr8 (48-80)||(39954289-39954321)
[»] chr3 (3 HSPs)
chr3 (48-80)||(11313810-11313842)
chr3 (48-80)||(32804550-32804582)
chr3 (48-80)||(49505164-49505196)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 36281654 - 36282147
Alignment:
Q  12 acagacatcagacgtcggacaccaacatgtcaatac------------gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtat 99  Q
    ||||||||||||||||||||||||||||| ||||||            ||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  36281654 acagacatcagacgtcggacaccaacatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtccgtgt 36281753  T
Q  100 cggacacggatgtgtgttcgacgtcgaaacacgcctaatccgctaagagtttgtgcttcgtaaattttaacaatggcttgagcttaaagaaatttatcat 199  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36281754 cggacacggacgtgtgttcgacgccgaaacacgcctaatccgctaagagtttgtgcttcgtaatttttaacaatggcttgagcttaaagaaatttatcat 36281853  T
Q  200 caaatgatgaatatattcataaagcgaaactgatagtgattcccaacttttcttttatttcctaagattaatctaaaggggaggcaacaaggagaattcc 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  36281854 cgaatgatgaatatattcataaagcgaaactgatagtgattcccaacttttcttttatttcctaagattaatctaaaggggagg---caaggagaattcc 36281950  T
Q  300 aaggcatcatcaattgttgaatataagttctgaatattttcaataacggtataaatggttaaaaccttccttaactaaacatattcatggtaatgttgct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36281951 aaggcatcatcaattgttgaatataagttctgaatattttcaataacggtat-aatggttaaaaccttccttaactaaacatattcatggtaatgttgct 36282049  T
Q  400 gattataaggataatttaaggaagagtttggagtataaaggtattccactcacaaattgacaaccacaacaaaaactcagactaagtggtggtgtctt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36282050 gattataaggataatttaaggaagagtttggagtataaaggtattccactcacaaattgacaaccacaacaaaaactcagactaagtggtggtgtctt 36282147  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 34785023 - 34784965
Alignment:
Q  49 agaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 107  Q
    ||||||||||||||||||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  34785023 agaaaatcacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacg 34784965  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 18889633 - 18889575
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacac 106  Q
    ||||||||||||||||| ||||||||||||||| ||| |||  ||| ||| ||||||||    
T  18889633 gagaaaatcacataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacac 18889575  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 29970591 - 29970543
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctg 96  Q
    ||||||||| |||| || ||||||||||||||| ||||||| |||||||    
T  29970591 gagaaaatcgcatagttcagtgtaatcatatgtgtcgatgtcgtgtctg 29970543  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 15902842 - 15902898
Alignment:
Q  51 aaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 107  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  15902842 aaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggacacg 15902898  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 13134468 - 13134513
Alignment:
Q  49 agaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 94  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||    
T  13134468 agaaaatcacataatttagtgtaattatatgtgtcgatgtcgtgtc 13134513  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 46084029 - 46083974
Alignment:
Q  52 aaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 107  Q
    |||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  46084029 aaatcacataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacg 46083974  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 10499312 - 10499280
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  10499312 gagaaaatcacataatttagtgtaattatatgt 10499280  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 33950153 - 33950185
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    ||||||||||||||||||| |||||||||||||    
T  33950153 gagaaaatcacataatttaatgtaatcatatgt 33950185  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 26562706 - 26562766
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacgg 108  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||| || ||| ||||||    
T  26562706 gagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcgaacacgg 26562766  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 7086812 - 7086858
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 94  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  7086812 gagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 10842552 - 10842586
Alignment:
Q  51 aaaatcacataatttagtgtaatcatatgtttcga 85  Q
    |||||||||||||||||||||||||||||| ||||    
T  10842552 aaaatcacataatttagtgtaatcatatgtgtcga 10842586  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 26178720 - 26178682
Alignment:
Q  51 aaaatcacataatttagtgtaatcatatgtttcgatgtg 89  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  26178720 aaaatcacataatttagtgtaatcatatgtgtcggtgtg 26178682  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 13360414 - 13360378
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcg 84  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  13360414 gagaaaatcacataattcagtgtaattatatgtttcg 13360378  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 44482247 - 44482306
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 107  Q
    ||||||||||||||||| |||||||| |||||| ||| ||| ||||| || |||||||||    
T  44482247 gagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacg 44482306  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 20157392 - 20157346
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 94  Q
    ||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  20157392 gagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 14332684 - 14332652
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  14332684 gagaaaatcacataatttagtgtaattatatgt 14332652  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 41091299 - 41091253
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 94  Q
    ||||||||||||||||| |||||||| |||||| ||||||| |||||    
T  41091299 gagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtc 41091253  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 2577222 - 2577189
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtt 81  Q
    |||||||| |||||||||||||||||||||||||    
T  2577222 gagaaaatgacataatttagtgtaatcatatgtt 2577189  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 2572095 - 2572039
Alignment:
Q  51 aaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 107  Q
    ||||||||||||||||||||||| | | || ||| ||| |||||||| |||||||||    
T  2572095 aaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacg 2572039  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 14731729 - 14731761
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  14731729 gagaaaatcacataatttagtgtaattatatgt 14731761  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 34897102 - 34897142
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgtttcgatgt 88  Q
    ||||||||||||||||| |||||||| |||||| |||||||    
T  34897102 gagaaaatcacataattcagtgtaattatatgtgtcgatgt 34897142  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 39954321 - 39954289
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  39954321 gagaaaatcacataatttagtgtaattatatgt 39954289  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 11313842 - 11313810
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  11313842 gagaaaatcacataatttagtgtaattatatgt 11313810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 32804582 - 32804550
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  32804582 gagaaaatcacataatttagtgtaattatatgt 32804550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 49505196 - 49505164
Alignment:
Q  48 gagaaaatcacataatttagtgtaatcatatgt 80  Q
    |||||||||||||||||||||||||| ||||||    
T  49505196 gagaaaatcacataatttagtgtaattatatgt 49505164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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