View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_42 (Length: 503)

Name: NF1498_high_42
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_42
NF1498_high_42
[»] chr6 (50 HSPs)
chr6 (1-137)||(29826090-29826229)
chr6 (91-284)||(27592858-27593051)
chr6 (327-501)||(26802850-26803028)
chr6 (26-283)||(27718218-27718475)
chr6 (79-284)||(27679090-27679295)
chr6 (79-284)||(26802586-26802791)
chr6 (79-284)||(27677452-27677657)
chr6 (79-282)||(27604545-27604748)
chr6 (26-283)||(27610841-27611098)
chr6 (79-284)||(27706240-27706445)
chr6 (79-284)||(27698332-27698537)
chr6 (326-501)||(27677220-27677394)
chr6 (326-501)||(27592621-27592800)
chr6 (326-501)||(27679353-27679532)
chr6 (79-264)||(26884309-26884494)
chr6 (327-501)||(27604304-27604484)
chr6 (79-267)||(27427461-27427649)
chr6 (79-273)||(26861757-26861951)
chr6 (82-273)||(28786425-28786616)
chr6 (82-273)||(28792546-28792737)
chr6 (82-273)||(28781286-28781477)
chr6 (326-501)||(27706004-27706182)
chr6 (336-501)||(27427212-27427380)
chr6 (336-501)||(28781516-28781683)
chr6 (353-501)||(28786670-28786820)
chr6 (353-501)||(28792791-28792941)
chr6 (82-171)||(31284435-31284524)
chr6 (439-501)||(27610720-27610782)
chr6 (79-171)||(27724796-27724888)
chr6 (79-254)||(27531065-27531240)
chr6 (444-501)||(27718099-27718156)
chr6 (91-159)||(28227106-28227174)
chr6 (85-159)||(28181264-28181338)
chr6 (91-159)||(28234719-28234787)
chr6 (387-501)||(27698186-27698301)
chr6 (85-159)||(28185516-28185590)
chr6 (91-171)||(28242960-28243040)
chr6 (85-137)||(28297698-28297750)
chr6 (85-137)||(28514323-28514375)
chr6 (26-161)||(26937185-26937320)
chr6 (89-171)||(28098320-28098402)
chr6 (101-171)||(28325647-28325717)
chr6 (466-501)||(27530901-27530936)
chr6 (101-159)||(26949827-26949885)
chr6 (118-159)||(26848843-26848884)
chr6 (469-501)||(25483609-25483641)
chr6 (469-501)||(25539093-25539125)
chr6 (92-132)||(26893461-26893501)
chr6 (467-503)||(27337693-27337728)
chr6 (467-503)||(27398433-27398468)
[»] scaffold0349 (4 HSPs)
scaffold0349 (79-283)||(14195-14399)
scaffold0349 (79-283)||(3259-3464)
scaffold0349 (444-501)||(3139-3196)
scaffold0349 (439-492)||(14082-14135)
[»] scaffold0003 (2 HSPs)
scaffold0003 (79-267)||(59714-59902)
scaffold0003 (336-501)||(59983-60151)
[»] chr4 (11 HSPs)
chr4 (79-267)||(18073906-18074094)
chr4 (327-501)||(18731100-18731274)
chr4 (336-501)||(18723681-18723846)
chr4 (336-501)||(18698996-18699161)
chr4 (336-501)||(18074175-18074343)
chr4 (364-501)||(18655073-18655211)
chr4 (435-501)||(18679156-18679222)
chr4 (26-171)||(5090905-5091050)
chr4 (79-156)||(18655430-18655507)
chr4 (79-156)||(18679520-18679597)
chr4 (97-158)||(31159831-31159892)
[»] scaffold0277 (4 HSPs)
scaffold0277 (79-264)||(4529-4714)
scaffold0277 (82-264)||(13490-13672)
scaffold0277 (336-501)||(13275-13442)
scaffold0277 (336-501)||(4312-4481)
[»] scaffold0419 (2 HSPs)
scaffold0419 (82-264)||(7672-7854)
scaffold0419 (336-501)||(7902-8069)
[»] scaffold0038 (4 HSPs)
scaffold0038 (91-159)||(27604-27672)
scaffold0038 (85-159)||(34875-34949)
scaffold0038 (91-171)||(43122-43202)
scaffold0038 (101-171)||(116962-117032)
[»] chr5 (1 HSPs)
chr5 (82-158)||(16689158-16689234)
[»] chr1 (2 HSPs)
chr1 (79-272)||(28127516-28127709)
chr1 (79-152)||(28164320-28164392)
[»] scaffold0019 (1 HSPs)
scaffold0019 (91-159)||(58245-58313)
[»] chr2 (1 HSPs)
chr2 (92-137)||(3279848-3279893)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 9e-65; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 29826090 - 29826229
Alignment:
Q  1 attcctattttctctaccaattatgcttc---ttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgc 97  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826090 attcctattttctctaccaattatgcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgc 29826189  T
Q  98 ctattttctatgatgtggatccttctcatgtgcgacatca 137  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29826190 ctattttctatgatgtggatccttctcatgtgcgacatca 29826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 27593051 - 27592858
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggtttcaaaatg 190  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  27593051 gttttgcctgttttctttggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatg 27592952  T
Q  191 atacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgggtaccc 284  Q
    || |||| |||||||| ||| ||||| ||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27592951 atccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtaccc 27592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 327 - 501
Target Start/End: Original strand, 26802850 - 26803028
Alignment:
Q  327 caataatctcatcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtcta 426  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||| |||||||||||||||| ||| ||    
T  26802850 caataatctcatcttaaaggttaaatgggaaatacctttcttatatacgtttttaaacaagtattagttatttatatgttgaaatagttagaaatgtata 26802949  T
Q  427 atgta-taggagtacatggatgtgattgtgatgttgt---tacatactaacttatcgtattggacatgaatagatatga 501  Q
    || || || ||||||||||||||||||||||||||||   |||||||||||||||| | ||||||||||||||||||||    
T  26802950 atatattatgagtacatggatgtgattgtgatgttgttagtacatactaacttatcttgttggacatgaatagatatga 26803028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 27718475 - 27718218
Alignment:
Q  26 cttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctca 125  Q
    ||||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| ||| || |    
T  27718475 cttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaa 27718376  T
Q  126 tgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaa 225  Q
     ||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  27718375 cgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaa 27718276  T
Q  226 acagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgggtacc 283  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27718275 gtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 284
Target Start/End: Original strand, 27679090 - 27679295
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||| ||||| |||||| || |||||| ||| ||  ||||||||||| ||||||||||||||||||||||||||||||||||           
T  27679090 aagggtcgcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaaga 27679189  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    |||||||||||||| |||| |||||||| ||| ||||  |||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27679190 ggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgg 27679289  T
Q  279 gtaccc 284  Q
    ||||||    
T  27679290 gtaccc 27679295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 79 - 284
Target Start/End: Original strand, 26802586 - 26802791
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| ||||| ||||||||||||| || |||||||||| || ||||||| ||||||| | |||| ||||||||||||||||||||||||           
T  26802586 aagggtcgcctcgtcttgcctattttctttggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaaaaaa 26802685  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    ||||||||||||||| | |||||||||| ||| || |||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26802686 ggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcg 26802785  T
Q  279 gtaccc 284  Q
    ||||||    
T  26802786 gtaccc 26802791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 27677657 - 27677452
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||| ||||| |||||| || |||||| ||| ||  |||||||||||| |||||||||||||||||||||||||||||||||           
T  27677657 aagggtcgcctcgttctgcctgttttctttgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaaga 27677558  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    |||||||||||||| |||| | |||||| ||| ||||| ||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27677557 ggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgg 27677458  T
Q  279 gtaccc 284  Q
    ||||||    
T  27677457 gtaccc 27677452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 79 - 282
Target Start/End: Complemental strand, 27604748 - 27604545
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    ||||||||  ||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||           
T  27604748 aagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgagcataaaaaaa 27604649  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    ||||||||||||||  | |||||||  | ||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  27604648 ggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgg 27604549  T
Q  279 gtac 282  Q
    ||||    
T  27604548 gtac 27604545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 27611098 - 27610841
Alignment:
Q  26 cttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctca 125  Q
    ||||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| ||| || |    
T  27611098 cttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaa 27610999  T
Q  126 tgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaa 225  Q
     ||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  27610998 agtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaa 27610899  T
Q  226 acagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgggtacc 283  Q
       ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  27610898 gtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctgggtacc 27610841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 27706445 - 27706240
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||| ||||| |||| | || ||| || ||| ||  ||||||||||| ||||||||||||||||||||||||||||||||||           
T  27706445 aagggtcgcctcgttctgcctgttttatttggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaaga 27706346  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    |||||||||||||| |||| |||||||| ||| ||||| ||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27706345 ggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgg 27706246  T
Q  279 gtaccc 284  Q
    ||||||    
T  27706245 gtaccc 27706240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 27698537 - 27698332
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||||||||| ||||||  | |||||| ||  || ||||| ||||||||||||||||||||||  |||||||||||||||||           
T  27698537 aagggtcgcctcgttttgcctgttttcttcggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaaaaga 27698438  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    |||||||||||||| |||| |||||||| ||| ||||| ||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||  |    
T  27698437 ggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcccag 27698338  T
Q  279 gtaccc 284  Q
    ||||||    
T  27698337 gtaccc 27698332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 326 - 501
Target Start/End: Complemental strand, 27677394 - 27677220
Alignment:
Q  326 acaataatctcatcttaaaggttaaatgggaaataccttttttatatac-gttttcagacaagtattatttatttataggttgaaatagttagaactgtc 424  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |  | ||||| ||||||||| || ||||||||||||| |||     
T  27677394 acaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaagtactattagttatttatatgtcgaaatagttagaaatgta 27677295  T
Q  425 taatgtataggagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    ||||  ||   ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  27677294 taatacatt--agtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatga 27677220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 501
Target Start/End: Complemental strand, 27592800 - 27592621
Alignment:
Q  326 acaataatctcatcttaaaggttaaatgggaaataccttttttatatacgttttcagacaag---tattatttatttataggttgaaatagttagaactg 422  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||   ||||| ||||||||| || ||||||||||||| ||    
T  27592800 acaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatg 27592701  T
Q  423 tctaatgta-taggagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    | ||||  | |   ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  27592700 tataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatga 27592621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 501
Target Start/End: Original strand, 27679353 - 27679532
Alignment:
Q  326 acaataatctcatcttaaaggttaaatgggaaataccttttttatatacgttttcagacaag---tattatttatttataggttgaaatagttagaactg 422  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||   ||||| ||||||||| || ||||||||||||| ||    
T  27679353 acaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatg 27679452  T
Q  423 tctaatgta-taggagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    | ||||  | |   ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  27679453 tataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatga 27679532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 26884309 - 26884494
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||||||||| ||||   || |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |||           
T  26884309 aagggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaaaaaa 26884408  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccat 264  Q
    ||||||||||||||| | |||||||||| ||| |||||||||||||||  ||| |||| || | ||||||| ||||||||||||||    
T  26884409 ggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat 26884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 327 - 501
Target Start/End: Complemental strand, 27604484 - 27604304
Alignment:
Q  327 caataatctcatcttaaaggttaaatggga---aataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgt 423  Q
    |||||||||||| || ||||||||||| ||   |||||||||||||| |||||||| | |||||||||| ||||||||| ||  |||||||||||| |||    
T  27604484 caataatctcatattcaaggttaaatgagatcaaataccttttttatttacgtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgt 27604385  T
Q  424 ctaatgtatag---gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
     |||| |||     | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27604384 ataatatattctgagtgtacatggatgtgattatgatgttgttacatactaacttatcttattggacatgaatagatatga 27604304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 27427649 - 27427461
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||||| |||||| |||||| |||||||||||||||||           
T  27427649 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 27427550  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgat 267  Q
    ||||||||||||||||||| |||||||| ||| |||||| |||||||   |||||||| | |||||||||| || || |||||||||||    
T  27427549 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 273
Target Start/End: Original strand, 26861757 - 26861951
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    ||||||||  ||||||||||| |||||||||   |||||||| || ||||||||||||||| ||||| ||||||||||||||||||| |||||           
T  26861757 aagggtcgcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaaa 26861856  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcct 273  Q
    ||||||||||||||| | |||||||||| ||| ||||| ||||||||   ||||||| ||| ||||||||| |||| |||||||||  |||||||    
T  26861857 ggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 28786425 - 28786616
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggt 181  Q
    ||||| |||||||||||| |||||| || ||| |||||| || ||||||||||||||| |||| ||||||||||||||||||||| ||||       |||    
T  28786425 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28786524  T
Q  182 ttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcct 273  Q
    |||||||||||| | |||||||||| ||| |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||  |||||||    
T  28786525 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 28792546 - 28792737
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggt 181  Q
    ||||| |||||||||||| |||||| || ||| |||||| || ||||||||||||||| |||| ||||||||||||||||||||| ||||       |||    
T  28792546 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28792645  T
Q  182 ttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcct 273  Q
    |||||||||||| | |||||||||| ||| |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||  |||||||    
T  28792646 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 28781286 - 28781477
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggt 181  Q
    ||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| ||||  ||||||||||||||||||||  |||       |||    
T  28781286 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctggacatgaaaagaggt 28781385  T
Q  182 ttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcct 273  Q
    |||||||||||| | |||||||||| ||| |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||  |||||||    
T  28781386 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 326 - 501
Target Start/End: Complemental strand, 27706182 - 27706004
Alignment:
Q  326 acaataatctcatcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatt---tatttataggttgaaatagttagaactg 422  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||  ||| | ||||||| ||||   |||||||| || ||||||||||||| ||    
T  27706182 acaataatctcatcttaaagtttaaa-gggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatg 27706084  T
Q  423 tctaatgtatagg-agtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
      ||||  ||    |||||||||||||||||| |||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  27706083 aataatacattcttagtacatggatgtgattgggatgttgttagacactaacttatcttattgcacatgaatagatatga 27706004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 501
Target Start/End: Complemental strand, 27427380 - 27427212
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgtat-ag 434  Q
    ||||||||||  |||||| | || ||||||||||| || ||||| | |||| | ||| ||||||||| ||  ||||||||| || ||| |||| ||| |     
T  27427380 catcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 27427281  T
Q  435 gagtacatggatgtgattgtg--atgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  27427280 gagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatga 27427212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 28781516 - 28781683
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtctaatgtatag 434  Q
    ||||||||||  ||||||||||| || |||| ||| |||||||| | |||| |||| | |||||| || ||  |||||||||||| ||| || | |||      
T  28781516 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaattatttaattatttttatgtcaaaatagttagaaatgtatactatattc 28781615  T
Q  435 -gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  28781616 tgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaatagatatga 28781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 353 - 501
Target Start/End: Original strand, 28786670 - 28786820
Alignment:
Q  353 gggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtctaatgtatag-gagtacatggatgtga 450  Q
    |||||| ||||||| ||| |||||||| | ||||||||| | |||||| || ||  |||||||||||| ||| || | |||   ||||||||||||||||    
T  28786670 gggaaacaccttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtga 28786769  T
Q  451 ttgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  28786770 ttgtgatgttgttacatactaacttatcttatatgacatgaatagatatga 28786820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 353 - 501
Target Start/End: Original strand, 28792791 - 28792941
Alignment:
Q  353 gggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtctaatgtatag-gagtacatggatgtga 450  Q
    |||||| ||||||| ||| |||||||| | ||||||||| | |||||| || ||  |||||||||||| ||| || | |||   ||||||||||||||||    
T  28792791 gggaaacaccttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtga 28792890  T
Q  451 ttgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  28792891 ttgtgatgttgttacatactaacttatcttatcggacattaatagatatga 28792941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 31284435 - 31284524
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    ||||| |||||||||||  |||||| ||  |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  31284435 ggtcgcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat 31284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 27610782 - 27610720
Alignment:
Q  439 acatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  27610782 acatggatgtgattgtgatgttgtcacatactaacttatcttattgggcatgaatagatatga 27610720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 27724888 - 27724796
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    |||||||| |||||||||||| ||||||  |  ||||| ||| || | ||||||||||| |||||||||||||||||||||||||||||||||    
T  27724888 aagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcat 27724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 27531240 - 27531065
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||| |||| ||||||||| ||||   || |||||||||| || ||||||||||||| | |||||| |||||||||||||| |||| ||||           
T  27531240 aagggttgtcttgttttgcctgtttttattggtgtggatcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaa 27531141  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtc 254  Q
     |||||||||||||| | ||||||  || ||| |||||| |||||||  |||||||||||| || |||||| ||||    
T  27531140 agtttcaaaatgataaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgtc 27531065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 501
Target Start/End: Complemental strand, 27718156 - 27718099
Alignment:
Q  444 gatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  27718156 gatgtgattgtgatgttgtcacatactaacttatcttactggacatgaatagatatga 27718099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 28227106 - 28227174
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||||| |||||    
T  28227106 gttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 28227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 28181264 - 28181338
Alignment:
Q  85 cgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| |||||    
T  28181264 cgtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28181338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 28234719 - 28234787
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| |||||    
T  28234719 gttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28234787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 501
Target Start/End: Complemental strand, 27698301 - 27698186
Alignment:
Q  387 gtattatttatttataggttgaaatagttagaactgtctaatgtatag-gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattgg 485  Q
    |||||| ||||||||| || ||||||||||||| | | |||| |||   |||||||| |||||||||||||||||||| ||||||||||| || || | |    
T  27698301 gtattagttatttatatgtcgaaatagttagaaatttataatatattctgagtacatagatgtgattgtgatgttgtttcatactaacttttcttactcg 27698202  T
Q  486 acatgaatagatatga 501  Q
    ||| || |||||||||    
T  27698201 acacgagtagatatga 27698186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 28185516 - 28185590
Alignment:
Q  85 cgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |  || ||||||||| |||||    
T  28185516 cgtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacacgggcagttatggtaaagca 28185590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 28242960 - 28243040
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    |||||||| ||||||||||||||||| |||||| | ||| ||||||| |  || ||||||||| ||||| |||||||||||    
T  28242960 gttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 28243040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 28297750 - 28297698
Alignment:
Q  85 cgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 137  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  28297750 cgtctagttttgccgattttttatgatgtggaaccttctcatgtgcgacatca 28297698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 28514323 - 28514375
Alignment:
Q  85 cgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 137  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  28514323 cgtctagttttgccgattttttatgatgtggaaccttctcatgtgcgacatca 28514375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 26937185 - 26937320
Alignment:
Q  26 cttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctca 125  Q
    ||||||| ||||| || || |||||||| || || ||||| ||  ||||||  || |||| |||  ||||||||||||||||||| ||||||||||||||    
T  26937185 cttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtcatctaattttgcctattttctatgaagtggatccttctca 26937284  T
Q  126 tgtgcgacatcataaaggtagttatggtgaagcatt 161  Q
     || ||||| || |  || |||||||||| ||||||    
T  26937285 cgttcgacaccaaactgggagttatggtgcagcatt 26937320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 28098402 - 28098320
Alignment:
Q  89 tcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    ||||||| |||||||| | ||| ||||| |||||||| ||||||||||| |  || ||||||||||||||||| ||| |||||    
T  28098402 tcgtttttcctattttttgtgacgtggaaccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcat 28098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 28325647 - 28325717
Alignment:
Q  101 ttttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    ||||||| |||||||| |||||||| ||||||||||| || || ||||||||| ||||| |||| ||||||    
T  28325647 ttttctacgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 28325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 501
Target Start/End: Complemental strand, 27530936 - 27530901
Alignment:
Q  466 atactaacttatcgtattggacatgaatagatatga 501  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27530936 atactaacttatcttattggacatgaatagatatga 27530901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 26949827 - 26949885
Alignment:
Q  101 ttttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    ||||||||||||| || |||||||| ||||||||||| ||   ||||||||||||||||    
T  26949827 ttttctatgatgtagaaccttctcacgtgcgacatcagaattatagttatggtgaagca 26949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 26848843 - 26848884
Alignment:
Q  118 ccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  26848843 ccttctcatgtgcgacatcagaatagtagttatggtgaagca 26848884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 25483609 - 25483641
Alignment:
Q  469 ctaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||| ||||||||||||||||||||||    
T  25483609 ctaacttatcttattggacatgaatagatatga 25483641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 25539093 - 25539125
Alignment:
Q  469 ctaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||| ||||||||||||||||||||||    
T  25539093 ctaacttatcttattggacatgaatagatatga 25539125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 26893501 - 26893461
Alignment:
Q  92 ttttgcctattttctatgatgtggatccttctcatgtgcga 132  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  26893501 ttttgcctgttttctatgatgtgcatccttctcaagtgcga 26893461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 27337728 - 27337693
Alignment:
Q  467 tactaacttatcgtattggacatgaatagatatgagt 503  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27337728 tactaacttatc-tattggacatgaatagatatgagt 27337693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 27398468 - 27398433
Alignment:
Q  467 tactaacttatcgtattggacatgaatagatatgagt 503  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27398468 tactaacttatc-tattggacatgaatagatatgagt 27398433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 14399 - 14195
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||||||||| ||||||  |  ||||| ||| || | ||||||||||| |||||||||||||||||||||||||||||||||           
T  14399 aagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaaga 14300  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctgg 278  Q
    |||||||||||||| |||| |||||||| ||| ||||| ||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14299 ggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgg 14200  T
Q  279 gtacc 283  Q
    |||||    
T  14199 gtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 3464 - 3259
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||| ||||| |||| | || |||||| ||| ||  ||||||||||| ||||||||||||||||||||||||||||||||||           
T  3464 aagggtcgcctcgttctgcctgttttatttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaaga 3365  T
Q  179 ggtttcaaaatgatacgaataa-catggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcctcctg 277  Q
    |||||||||||||| |||| || |||||| ||| ||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3364 ggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 3265  T
Q  278 ggtacc 283  Q
    ||||||    
T  3264 ggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 501
Target Start/End: Complemental strand, 3196 - 3139
Alignment:
Q  444 gatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  3196 gatgtgattgtgatgttgtcacatactaacttatcttactggacatgaatagatatga 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 14135 - 14082
Alignment:
Q  439 acatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaa 492  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  14135 acatggatgtgattgtgatgttgtcacatactaacttatcttattggacatgaa 14082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 59714 - 59902
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||||| |||||| |||||| |||||||||||||||||           
T  59714 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 59813  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgat 267  Q
    ||||||||||||||||||| |||||||| ||| |||||| |||||||   |||||||| | |||||||||| || || |||||||||||    
T  59814 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 59983 - 60151
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgtat-ag 434  Q
    ||||||||||  |||||| | || ||||||||||| || ||||| | |||| | ||| ||||||||| ||  ||||||||| || ||| |||| ||| |     
T  59983 catcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 60082  T
Q  435 gagtacatggatgtgattgtg--atgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  60083 gagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatga 60151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 18073906 - 18074094
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||||| |||||| |||||| |||||||||||||||||           
T  18073906 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 18074005  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgat 267  Q
    ||||||||||||||||||| |||||||| ||| |||||| |||||||   |||||||| | |||||||||| || || |||||||||||    
T  18074006 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 501
Target Start/End: Complemental strand, 18731274 - 18731100
Alignment:
Q  327 caataatctcatcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtcta 426  Q
    |||||||  ||||||||||  ||||| ||||| ||||||||| | ||| |||| | |||||||||| ||||||||| ||  |||||||||||| ||| |     
T  18731274 caataataccatcttaaagcctaaattggaaacacctttttttt-tacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatg 18731176  T
Q  427 atgtat-aggagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    || ||| | ||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18731175 atatattatgaggacatggatgtgactgtgatgttgttacatactgacttatcttattggacatgaatagatatga 18731100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 501
Target Start/End: Complemental strand, 18723846 - 18723681
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgtat-ag 434  Q
    ||||||||||  ||||| ||||| |||||||| || ||| |||| | |||||||||| ||||||||| ||  |||||||||||| ||| | || ||| |     
T  18723846 catcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattat 18723748  T
Q  435 gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18723747 gagtaaatggatgtgactgtgatgttgttacatactgacttatcttattggacatgaatagatatga 18723681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 501
Target Start/End: Complemental strand, 18699161 - 18698996
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgta-tag 434  Q
    ||||||||||  ||||| ||||| |||||||| || |||||||| | |||||||||| ||||||||| ||  |||||||||||| ||| | || || ||     
T  18699161 catcttaaagcctaaattggaaacacctttttaat-tacgtttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatactat 18699063  T
Q  435 gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    ||| |||||||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||||||||    
T  18699062 gaggacatggatgtgactgtgatgttgttacacactgatttatcttattggacatgaatagatatga 18698996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 18074175 - 18074343
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgtat-ag 434  Q
    ||||||||||  |||||| | || ||||||||||| || ||||| | |||| | ||| ||||||||| ||  ||||||||| || ||| |||| ||| |     
T  18074175 catcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 18074274  T
Q  435 gagtacatggatgtgattgtg--atgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  18074275 gagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatga 18074343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 18655211 - 18655073
Alignment:
Q  364 tttttatatacgttttcagacaagtattatttatttataggttgaaatagttagaactgtctaatgtat-aggagtacatggatgtgattgtgatgttgt 462  Q
    ||||||| ||| |||| | |||||||||| ||||||||| ||  |||||||||||| ||| | || ||| | ||||| |||||||||| |||||||||||    
T  18655211 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatgagtaaatggatgtgactgtgatgttgt 18655112  T
Q  463 tacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||| ||| | ||||| ||||||||||||||||||||||    
T  18655111 tacacactgatttatcttattggacatgaatagatatga 18655073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 18679222 - 18679156
Alignment:
Q  435 gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18679222 gagtacatgggtgtgactgtgatgttgttacatactgacttatcttattggacatgaatagatatga 18679156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 5091050 - 5090905
Alignment:
Q  26 cttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctca 125  Q
    ||||||||||||| |||||||||||||| |||||  || | ||   ||||   || ||| | || ||||||||||||||||||| |||||| ||||||||    
T  5091050 cttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtggaaccttctca 5090951  T
Q  126 tgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    ||||||| |||| |  || ||||||||||||||| | |||||||||    
T  5090950 tgtgcgatatcagactggaagttatggtgaagcacttgctgagcat 5090905  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 18655507 - 18655430
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaa 156  Q
    ||||||||||||||||| ||| |||||||||  ||||||||| ||||  | |||||||| |  || ||||||||||||    
T  18655507 aagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaa 18655430  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 18679597 - 18679520
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaa 156  Q
    ||||||||||| ||||||||| |||||||||  ||||||||| ||||  |  ||||||| |  |||||||||||||||    
T  18679597 aagggtcgtcttgttttgcctgttttctatgtcgtggatcctactcacatatgacatcaaagtggtagttatggtgaa 18679520  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 31159892 - 31159831
Alignment:
Q  97 cctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagc 158  Q
    ||||||||||||||||| ||||||||| | ||| ||||||| || || |||||||| |||||    
T  31159892 cctattttctatgatgttgatccttctgaggtgagacatcaaaatggaagttatggagaagc 31159831  T

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Target: scaffold0277 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 4714 - 4529
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| |||||||||||| ||||||  |  ||||| ||| || | ||||||||||  |||||||||||||||||||||||||||||||||           
T  4714 aagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgagcatgaaaaga 4615  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccat 264  Q
    ||||||||||||||| |||||||||||| ||| |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||    
T  4614 ggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 82 - 264
Target Start/End: Complemental strand, 13672 - 13490
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggt 181  Q
    ||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| |||| |||||||||||||||||||||  |||       |||    
T  13672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 13573  T
Q  182 ttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccat 264  Q
    |||||||||||| ||||||||||||  |  |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||    
T  13572 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 501
Target Start/End: Complemental strand, 13442 - 13275
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtctaatgtatag 434  Q
    ||||||||||  ||||||||||| || |||| ||| |||||||| | ||||||||| | ||| || || ||  |||||||||||| ||| || | |||      
T  13442 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattc 13343  T
Q  435 -gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  13342 tgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaatagatatga 13275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 501
Target Start/End: Complemental strand, 4481 - 4312
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtcta--atgtat 432  Q
    ||||||||||  ||||||||||| ||||||| ||| |||||||| | ||||||||| | ||| || || ||   ||||||||||| ||| ||  || |||    
T  4481 catcttaaagcctaaatgggaaacaccttttatatttacgtttttaaacaagtatttaattacttttatgtcacaatagttagaaatgtataccatatat 4382  T
Q  433 -aggagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
     | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  4381 tatgagtacatggatgtgattgtgatgttgttacatactaacttatcttatcggacattaatagatatga 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 7672 - 7854
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnnggt 181  Q
    ||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| |||| |||||||||||||||||||||  |||       |||    
T  7672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 7771  T
Q  182 ttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccat 264  Q
    |||||||||||| ||||||||||||  |  |||| | ||||||    ||||||| ||| ||||||||| ||||||||||||||    
T  7772 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 7854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 7902 - 8069
Alignment:
Q  336 catcttaaaggttaaatgggaaataccttttttatatacgttttcagacaagtatt-atttatttataggttgaaatagttagaactgtctaatgtatag 434  Q
    ||||||||||  ||||||||||| || |||| ||| |||||||| | ||||||||| | ||| || || ||  |||||||||||| ||| || | |||      
T  7902 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattc 8001  T
Q  435 -gagtacatggatgtgattgtgatgttgttacatactaacttatcgtattggacatgaatagatatga 501  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  8002 tgagtacatggatgtgattgtgatgttgttacatactaacttatcttatatgacatgaatagatatga 8069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 27604 - 27672
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||||| |||||    
T  27604 gttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 27672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 34875 - 34949
Alignment:
Q  85 cgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| |||||    
T  34875 cgtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 34949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 43122 - 43202
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    |||||||| ||||||||||||||||| |||||| | ||| ||||||| |  || ||||||||| ||||| |||||||||||    
T  43122 gttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 43202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 116962 - 117032
Alignment:
Q  101 ttttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcat 171  Q
    ||||||| |||||||| |||||||| ||||||||||| || || ||||||||| ||||| |||| ||||||    
T  116962 ttttctacgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 117032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 16689158 - 16689234
Alignment:
Q  82 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagc 158  Q
    ||||| || ||||||||| |||||||||| ||||||||||| |||||| ||||||| |  || ||||||||||||||    
T  16689158 ggtcggctagttttgcctgttttctatgacgtggatccttcgcatgtgagacatcagattggaagttatggtgaagc 16689234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 28127709 - 28127516
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatnnnnnnn 178  Q
    |||||||| || ||||||||| |||||| ||  ||||||||| || |||||||| |||||| ||| |||||||||||||   | ||| |||||           
T  28127709 aagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttatggtgaagagcttgctaagcatggagaga 28127610  T
Q  179 ggtttcaaaatgatacgaataacatggacaggctgcagcgatggaaaacagctctgagccaggctgctaacatgtccggctaccatgatagtcc 272  Q
    |||| |||||| | | ||| ||||||||  |  |||| | |||||| | |||||| | ||| ||||||||| |||||||||||||| |||||||    
T  28127609 ggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtcc 28127516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 28164392 - 28164320
Alignment:
Q  79 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatgg 152  Q
    |||||||| || ||||||||| |||||| ||  ||||||||| || ||||||||||||||| ||| ||||||||    
T  28164392 aagggtcgcctagttttgcctgttttct-tggcgtggatcctactgatgtgcgacatcatacagggagttatgg 28164320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 58313 - 58245
Alignment:
Q  91 gttttgcctattttctatgatgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagca 159  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||||||  | || ||||||||| |||||    
T  58313 gttttgccaattttctatgacgtggaaccttctcacgtgcgacatcaagatggaagttatggtaaagca 58245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3279848 - 3279893
Alignment:
Q  92 ttttgcctattttctatgatgtggatccttctcatgtgcgacatca 137  Q
    |||| |||||||||||||||||||| ||||| || |||||||||||    
T  3279848 ttttacctattttctatgatgtggaaccttcccacgtgcgacatca 3279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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