View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_44 (Length: 487)
Name: NF1498_high_44
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 11609987 - 11610179
Alignment:
| Q |
22 |
tccttccgtgggtgacattctaactttgtgttagtgtttgtatatacaa-----aatctgttaaaaactctaacttgattacataatcaatattaaatta |
116 |
Q |
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| T |
11609987 |
tccttccgtgggtgacattctaactttgtgttagtgtttgtatatacaacccacaatctgttaaaaactctaacttgattacatgatcaatattaaatta |
11610086 |
T |
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| Q |
117 |
atttgaaaacatcacattccacttacacaatctgaacatgttttgctccaatggtagaaaaactaaccaacttttatgcaacttatttttaat |
209 |
Q |
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| T |
11610087 |
atttgaaaacatcacattccacttacacaatctaaacatgttttgctccaatggtagaaaaactaaccaacttttatgcaacttatttttaat |
11610179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 352 - 470
Target Start/End: Original strand, 11610459 - 11610577
Alignment:
| Q |
352 |
aaatgaaataagtagggtctaatatttcccatagtcatatcattttttgttaaggtcaaccataaacttatatgcaagattcccctctcgtgggttggta |
451 |
Q |
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| T |
11610459 |
aaatggaatacgtagggtctaatatttaccatagtcacatcattttttgttagggtcaaccgtaaacttatatgcaagattcccctctcgtgggttggta |
11610558 |
T |
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| Q |
452 |
acttttgccattaagaatc |
470 |
Q |
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| T |
11610559 |
acttttgccattaagaatc |
11610577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 11610188 - 11610237
Alignment:
| Q |
279 |
tttataagtcataattaaattagccaatattagtgtcattctctccttaa |
328 |
Q |
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| T |
11610188 |
tttataagtcataattaaattagccaatgttagcgtcgttctctccttaa |
11610237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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