View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_52 (Length: 451)
Name: NF1498_high_52
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 6008505 - 6008932
Alignment:
| Q |
10 |
attattctcattggtccttctccaatcatgcataaacaccataagtccccactctcccataactaccatcaaagtctttaatataagtctaagtctaatc |
109 |
Q |
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| T |
6008505 |
attattctcattggtccttctccaatcatgcataaacaccataagtccccactctcccataactaccatcaaagtctttaatataagtctaagtctaatc |
6008604 |
T |
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| Q |
110 |
taaaagannnnnnnatcactaaatgtaaaattattagcacaatatttaattattttactatcttttagtgccattaaaacattgannnnnnnnnnnn--g |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
6008605 |
taaaagttttttttatcactaaatgtaaaattattagcacaatatttaattatttgactatcttttagtgccattaaaacattgattttttttttttttg |
6008704 |
T |
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| Q |
208 |
agagataaaacattgattagaaagatattttaaaatt-ttctctaaatacaacttaaatgnnnnnnnttactataatgacatttgatgtgcgatttgaac |
306 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6008705 |
agagataaaacattgattagaaagatattttaaaaatgttctctaaatacaacttaaatgaaaaaaattactataatgacatttgatgtgcgatttgaac |
6008804 |
T |
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| Q |
307 |
atattattctttacttcttagcatttaatacgtgtgagttttaatattaagcttctaaaaaacaaggcgagacatataagcccaaaactaaatggtgaga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6008805 |
atattattctttacttcttagcatttaatacgtgtgagttttaatattaagcttctaaaaaacaaggtgagacatataagcccaaaactaaatggtgaga |
6008904 |
T |
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| Q |
407 |
cccgaatttacgttgcaaaattgtggat |
434 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6008905 |
cccgaatttacgttgcaaaattgtggat |
6008932 |
T |
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