View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_53 (Length: 446)
Name: NF1498_high_53
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 41 - 430
Target Start/End: Complemental strand, 3980311 - 3979920
Alignment:
| Q |
41 |
aagaataaagaagatgtgatagtcaccatttcttttgatttaaaaatttaaaagggatcaatactttacatggttttatacccatgtggtccgtagtaca |
140 |
Q |
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| T |
3980311 |
aagaataaagaagatgtgatagtcaccatttcttttgattaaaaaatttaaaagagatcaatactttacatagttttataaccatgtgctccgtagtaca |
3980212 |
T |
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| Q |
141 |
atcttgaagattttatacccagcagcttcctacccc--ttcagtatatcttattctaatccttcttcacacatgacaaattaaatatataatttactaca |
238 |
Q |
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| T |
3980211 |
atcttgaagattttatacccagcagcttcctaccccctttcagtatatcttattctaatccttcttcacacatgacaaattaaatatataatttactaca |
3980112 |
T |
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| Q |
239 |
acataatgcctataaaatgagaatttggtttcattttgatacacacacaaatactcatacacaagtcatatattataagtaataaagagaaagaagataa |
338 |
Q |
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| T |
3980111 |
acataatgcctataaaatgagaatttagtttcattttgatacacacacaaatactcatacacaagtcatatattataagtaataaagagaaagaagataa |
3980012 |
T |
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| Q |
339 |
ggagatgagcagcaataaagttatttgggttctcatgcttaccttggtggttttggctaccatatctcaggccatttgtccagatggtaact |
430 |
Q |
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| T |
3980011 |
ggagatgagcagcaataaagttatttgggttctcatgcttaccttggtggttttggctaccatatctcaggccatttgtccagatggtaact |
3979920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3980788 - 3980749
Alignment:
| Q |
1 |
cgtcggggttacaaccctcgacgactaaggaggtagaaaa |
40 |
Q |
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| T |
3980788 |
cgtcggggtcacaaccctcgacgactaaggaggtagaaaa |
3980749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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