View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_59 (Length: 432)
Name: NF1498_high_59
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 56147999 - 56148342
Alignment:
| Q |
28 |
ccattccaatctgtcaaagctgctgttagtttatttggtgaagtagcagtccctagggacagattcgctgtcaagagaagatcatcagaggtatatacat |
127 |
Q |
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| T |
56147999 |
ccattccaatctgtcaaagctgctgttagtttatttggtgaagtagcagtccgtagggacagattcgctgtcaagagaagatcatcagaggtatata--t |
56148096 |
T |
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| Q |
128 |
caagtataataatttataccatattagatttttatatatattgtttcatacgaaatgattttgtaattttcaacattatgatatatatcacattgaatat |
227 |
Q |
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| T |
56148097 |
caagtataataatttataccatattatatttttatatatattgtttcatacgaaatgattttgtaattttcaacattatgatatatatcacattgaatat |
56148196 |
T |
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| Q |
228 |
tcatcaaaacattttaatcctagacatttt-aatgttggaaagaaagatatagtcnnnnnnntttgatatccaaagtttcacacaatacctgatgttagg |
326 |
Q |
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| T |
56148197 |
tcatcaaaacattttaatcctagacattttaaatgttggaaagaaagatatagtcaaaaatttttgatatccaaagtttcacacaatacctgatgttagg |
56148296 |
T |
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| Q |
327 |
caatttgacacacaaacaatacaaattaaagaccctctcgtcgtgggaaaac |
378 |
Q |
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| T |
56148297 |
caatttg--acacaaacaataca----aaaggccctctcgtcatgggaaaac |
56148342 |
T |
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