View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_63 (Length: 429)
Name: NF1498_high_63
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 50325468 - 50325208
Alignment:
| Q |
40 |
tctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagtttannnnnnnngtaattttagtatacctctaagaccatgaaa |
139 |
Q |
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| T |
50325468 |
tctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagttaattttttttgtaattttagtatacctctaagaccatgaaa |
50325369 |
T |
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| Q |
140 |
acgatttttcttggctccagatatttctggaggcattccaccagcattatcaatcccagtacctataataaatatcaaattgacatgtattaataaatat |
239 |
Q |
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| T |
50325368 |
acgatttttcttggctccagatatttctggaggcattccaccagcattatcaatcccagtacctataataaatatcaaattgacatgtattaataaatat |
50325269 |
T |
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| Q |
240 |
ccacaagtgaggcaccaaaatttgacacactaaatgtgggttgccatatcaatatcaatat |
300 |
Q |
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| T |
50325268 |
ccacaagtgaggcaccaaaatttgacacactaaatgtgggttgccatatcaatatcaatat |
50325208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 50325186 - 50325144
Alignment:
| Q |
372 |
ataaaagtgagaaaagaagtgttaaggcctaagggggaattgt |
414 |
Q |
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| T |
50325186 |
ataaaagtgagaaaagaagtgttaaggcccaagggggaattgt |
50325144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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