View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_67 (Length: 420)
Name: NF1498_high_67
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 51976804 - 51976408
Alignment:
| Q |
6 |
agtgagaagaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaac |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51976804 |
agtgagacaaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatccttacgataacattacgaaaaccaactttttccaac |
51976705 |
T |
|
| Q |
106 |
caaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaa |
205 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51976704 |
cacagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtacagttctctgtccatttggtggaacagaa |
51976605 |
T |
|
| Q |
206 |
gaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976604 |
gaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaa |
51976505 |
T |
|
| Q |
306 |
tagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
402 |
Q |
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| T |
51976504 |
tagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
51976408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 51972370 - 51972072
Alignment:
| Q |
16 |
atcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccaca |
115 |
Q |
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| T |
51972370 |
atcattgattcatcaacaatttcattgatcaaaatgataggcaaagacataatgtttttcacaacgttaggaaaaccaactttttccagccaaagccaca |
51972271 |
T |
|
| Q |
116 |
tagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtc |
215 |
Q |
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||||||||||||||||||| || || |||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||| ||||| ||| || |
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| T |
51972270 |
tagcaagcaatcgcatggactcagatggatcacgagaaaggttggtgacaaggattttgtagaggtctctgtccatttgatggaacataagaaaatcctc |
51972171 |
T |
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| Q |
216 |
tcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
315 |
Q |
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| T |
51972170 |
t-tgaggaacggtggaagaaagtggaggatccatggaaggaaacatgaaacaatgttatgtttgatttgggaaacttggtaatgtttaaatagtagtgaa |
51972072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 17726736 - 17727032
Alignment:
| Q |
18 |
cattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacata |
117 |
Q |
| |
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||||| |||| | ||||| |||||||||||| |||||||| |||||| ||| ||| | ||| ||| |||||||||||||||||||||||||||||||| |
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| T |
17726736 |
cattgtttcatcagcaatctcattgatcaaaataataggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacata |
17726835 |
T |
|
| Q |
118 |
gcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctc |
217 |
Q |
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||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||| || ||||| |||| ||||||||||||||||| ||| ||| |
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| T |
17726836 |
gcaagcaatcgcatggactcggatggatcacgagaaagttctgtgacaaggattttgtagaggtctctatccacttggtggaacagaagaaaatcctct- |
17726934 |
T |
|
| Q |
218 |
agagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
315 |
Q |
| |
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||| ||| |||||||||||||||| |||| | |||||||| ||||||||||||||||||||||| || ||| ||| ||| || ||||||||| |||| |
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| T |
17726935 |
tgaggaacggtgaaagaaagtggaggatccatggaaggaaaaatgaaacaatgctatgttcaatttggaaaacttgataacgtttaaatagtaatgaa |
17727032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 17711851 - 17712143
Alignment:
| Q |
17 |
tcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacat |
116 |
Q |
| |
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||||||||||| | ||||| |||||||||||| |||| ||| |||||| ||| ||| | ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
17711851 |
tcattgattcatcagcaatttcattgatcaaaataattggcaaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacat |
17711950 |
T |
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| Q |
117 |
agcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtct |
216 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||| || ||||||||||||||||||| ||| |||| ||| ||| |
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| T |
17711951 |
agcaagcaatcgcatggactcggatggatcacgagaaaggtctgtgacaaggattttgtagaggtctctgtccatttggtggatcaggagaaaatcctct |
17712050 |
T |
|
| Q |
217 |
cagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagta |
310 |
Q |
| |
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||| || |||||||||||||||| |||| | |||||||| |||||| |||| ||||||||||| | |||| | ||||||| ||||||||| |
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| T |
17712051 |
-tgaggaatggtgaaagaaagtggaggatccatggaaggaaatatgaaataatgttatgttcaatttgagaaactgtgtaatgtttaaatagta |
17712143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 40784241 - 40784499
Alignment:
| Q |
16 |
atcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccaca |
115 |
Q |
| |
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|||||||||||||| |||| |||| ||||||| ||| |||| ||||||||||| ||| | ||||| | ||||||||||| |||||| ||||||||||| |
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| T |
40784241 |
atcattgattcaacaacaatttcatcgatcaaaataacaggcaaagacacaatctttttcacaacatcatgaaaaccaactctttccagccaaagccaca |
40784340 |
T |
|
| Q |
116 |
tagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtc |
215 |
Q |
| |
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|||||||||| | || | | |||||||||||||| || ||||||||||| ||||| || ||||||||| || |||||||||||||| ||| || |
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| T |
40784341 |
tagcaagcaactgtgcagacttatatggatcacgagaaaggttggtgacaaggatattgtagaggtctctgtccgatttgtggaacagaagaaaatcctc |
40784440 |
T |
|
| Q |
216 |
tcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatg |
275 |
Q |
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| | |||| |||||||||||||| || |||| | |||| ||| ||||| |||| ||||| |
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| T |
40784441 |
t-tgggaaagagtgaaagaaagtgaagtatccatggaagaaaatatgaagcaatactatg |
40784499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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