View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_68 (Length: 420)
Name: NF1498_high_68
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 47852049 - 47851806
Alignment:
| Q |
8 |
gacatcatcaacattctgcattttgttgctttctggtttctatctgaattacgaccaatctttctgatatatacataataaatatgaatagtctttcatt |
107 |
Q |
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| T |
47852049 |
gacatcataaacattctgcattttgttgctttctggtttctatctgaattacgaccaatctttctgatatatacataataaatatgaatagtctttcatt |
47851950 |
T |
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| Q |
108 |
aagttattgttagttgannnnnnnnnaccgaaagaatttttaatgttgaagttttcagaaaaattaaagtcgtatcatacatcattttcatcttctgcgc |
207 |
Q |
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| T |
47851949 |
aagttattgttagttgatttttttttaccgaaagaatttttaatgttgaagttttcagaaaaattaaagtcgtatcatacatcattttcatcttctgcgc |
47851850 |
T |
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| Q |
208 |
tatatttcttattgtatgagagattgtttatctttcaattttag |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47851849 |
tatatttcttattgtatgagagattgtttatctttcaattttag |
47851806 |
T |
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