View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_69 (Length: 419)

Name: NF1498_high_69
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_69
NF1498_high_69
[»] chr5 (1 HSPs)
chr5 (25-400)||(11235963-11236339)
[»] chr3 (3 HSPs)
chr3 (25-400)||(52610163-52610539)
chr3 (342-400)||(11761592-11761650)
chr3 (247-296)||(11761666-11761715)
[»] chr8 (4 HSPs)
chr8 (26-329)||(23473152-23473456)
chr8 (25-400)||(23482599-23482953)
chr8 (25-306)||(34905890-34906172)
chr8 (73-108)||(35799913-35799948)
[»] chr6 (1 HSPs)
chr6 (289-356)||(34960017-34960084)
[»] chr7 (1 HSPs)
chr7 (160-304)||(38645500-38645645)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 400
Target Start/End: Original strand, 11235963 - 11236339
Alignment:
Q  25 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 124  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||            
T  11235963 ttccggtcaccataacttttccgtccggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttt 11236062  T
Q  125 nagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 224  Q
     |||||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11236063 tagattgaagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 11236162  T
Q  225 catgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggagttcacctctaccgcaccggaaaagtg 323  Q
    | |||||||||||||||||||  ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||    
T  11236163 cgtgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttgtcggcgaccaccgtgccggagttcacctctgccgcgccggaaaagtg 11236262  T
Q  324 gttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtagg 400  Q
    |||||||| |||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  11236263 gttgacggccatttactccatttttctccttcttgttgagtttcatcttccttccctcctctaaagtgtattgtagg 11236339  T

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Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 400
Target Start/End: Original strand, 52610163 - 52610539
Alignment:
Q  25 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 124  Q
    ||||||||| ||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  52610163 ttccggtcaacataaattttccgtccggcctcctttaaaatccccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaatttattta 52610262  T
Q  125 nagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 224  Q
     ||||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  52610263 tagattggagaagtttaatttttgagatctcccccttctttcttgttttccggccaccgtgagttgccatttggaaaaccaaacccaccatattctttct 52610362  T
Q  225 catgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggagttcacctctaccgcaccggaaaagtg 323  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||    
T  52610363 catgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtcggcggccactgtgccggagttcacctctaccgcgccggaaaagtg 52610462  T
Q  324 gttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtagg 400  Q
    |||||||| |||||||| |||||||||||||| |  ||||||||| |||| ||||||||||||||||| ||||||||    
T  52610463 gttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattccctcctctaaagtgcattgtagg 52610539  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 11761650 - 11761592
Alignment:
Q  342 catttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtagg 400  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  11761650 catttttctccttcttggtgagtttcatcttccttccctcctctaaagtgtattgtagg 11761592  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 11761715 - 11761666
Alignment:
Q  247 tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccgga 296  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||    
T  11761715 tatgtttattttgcaatcggagcaactttgtcagcaaccaccgtgccgga 11761666  T

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Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 329
Target Start/End: Complemental strand, 23473456 - 23473152
Alignment:
Q  26 tccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnnn 125  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||             
T  23473456 tccggtcaccataactattccgtccggcctcctttaaaatccctgccaccaccgttgaattcctctcttcttcctctacaaaagccctcaatttattttt 23473357  T
Q  126 agattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctc 225  Q
    ||||||||||| || || ||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  23473356 agattggagaagtttaatttttgagacttcccccttctctcttgttttccggccactgtgagttgccattgggaaaatcaaacccatcatattcttcctc 23473257  T
Q  226 atgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggagttcacctctaccgcaccggaaaagtgg 324  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||  || |||||||||    
T  23473256 atgatgtcagcaacaaaacctcgatgtttattttgcaattggagcaactttgtcggcgaccaccgtgccggagttcacctctaccgtgccagaaaagtgg 23473157  T
Q  325 ttgac 329  Q
    |||||    
T  23473156 ttgac 23473152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 25 - 400
Target Start/End: Complemental strand, 23482953 - 23482599
Alignment:
Q  25 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 124  Q
    |||| |||||||||||| |||||||  |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||            
T  23482953 ttccagtcaccataacttttccgtctggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttt 23482854  T
Q  125 nagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 224  Q
     |||||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23482853 tagattgaagaagtttaatttttgagatct-ccccttctctcttgttttccggccaccgtgagttgccattggaaaaaccaaacccaccatattcttcct 23482755  T
Q  225 catgatgtcagcaacaaaa-ccttatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggagttcacctctaccgcaccggaaaagtg 323  Q
    ||||||||||||||||||| || ||||||||||||||||| | |||||||||  ||||||||||||||||                     |||||| ||    
T  23482754 catgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttatcggcgaccaccgtgcc---------------------ggaaaattg 23482676  T
Q  324 gttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtagg 400  Q
    |||||||  |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  23482675 gttgacgaccatttactccatttttctccttcttggtgagtttcatcttccttccctcctctaaagtgtattgtagg 23482599  T

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Target: chr8; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 34906172 - 34905890
Alignment:
Q  25 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 124  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||            
T  34906172 ttccggtcaccataactttttcgtccggcctcctttaaaatcccctccatcaccattgaattcctctcttcttcctctacaaaagccatcaatttttttt 34906073  T
Q  125 nagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 224  Q
     ||||||||||| || || ||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34906072 tagattggagaagtttaattttcgagatctcccccttctctcttgtttttcggccaccgtgagttgccattgagaaaaccaaacccaacatattcttcct 34905973  T
Q  225 catgatgtcagcaacaaaa-ccttatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggagttcacctct 306  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  34905972 catgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgttggcgatcaccgtgccagagttcacctct 34905890  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 35799913 - 35799948
Alignment:
Q  73 accaccattgaattcctctcttcttcctctacaaaa 108  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35799913 accaccattaaattcctctcttcttcctctacaaaa 35799948  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 34960084 - 34960017
Alignment:
Q  289 gtgccggagttcacctctaccgcaccggaaaagtggttgacggtcatttacttcatttttctccttct 356  Q
    |||||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||||||||||    
T  34960084 gtgccggagttcacctctactgcgccgggaaagtggttgacagtcatttacttcatatttctccttct 34960017  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 38645500 - 38645645
Alignment:
Q  160 ttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacct-tatgtttatttt 258  Q
    |||||||||  ||| |||||||||||||   || || ||||||| || |||||||| | ||||||  |||| ||  ||| ||||||| ||||||| |||     
T  38645500 ttctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatctccttccttgtgatatctacaataaaacctctatgtttgtttc 38645599  T
Q  259 gcaatcggagcaactttgccggcgaccaccgtgccggagttcacct 304  Q
     ||||||||||||| ||| ||||||||||| ||||||| |||||||    
T  38645600 acaatcggagcaacattgtcggcgaccaccttgccggaattcacct 38645645  T

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