View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_7 (Length: 694)
Name: NF1498_high_7
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 82 - 678
Target Start/End: Original strand, 39267423 - 39268019
Alignment:
| Q |
82 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
181 |
Q |
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| T |
39267423 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
39267522 |
T |
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| Q |
182 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatctttctcttcttcaaccatttctccctggtctggtctccattcatgg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267523 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatgtttctcttcttcaaccatttctccctggtctggtctccattcatgg |
39267622 |
T |
|
| Q |
282 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctattctctatgattctccattcggagaagcttcttcattag |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |
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| T |
39267623 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctaatctccatgattctccattcggagaagcttcttcattgg |
39267722 |
T |
|
| Q |
382 |
ctgagtttggttctattgttctttccaccactgaccctcttgaaaagtctcgtctctcccatattgctttctccctctggctccgcggtgatcttcctct |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267723 |
ctgagtttggttctattgttctttccaccactgaccctcttgaaaagtctcgtctctcccatattgctttctccctctggctccgcggtgatcttcctct |
39267822 |
T |
|
| Q |
482 |
tggtcagtcagaccctccttctcgaccagcccgacccgataagcctgaactggtttgttcactcttctgcacaccacgtgtttgttttaatttttgataa |
581 |
Q |
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| T |
39267823 |
tggtcagtcagaccctccttctcgaccagcccgacccgataagcctgaactggtttgttcactcttctgcacaccacgtgtttgttttaatttttgataa |
39267922 |
T |
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| Q |
582 |
cccattagatgcatgatttgcctaagatacagataactatggtaagatgcataatgaattggttttctttgatttcaggtttctactaaggaaattc |
678 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267923 |
cccattagatgcatgatttgcctaagatacagataactatggtaagatgcataatgaattggttttctttgatttcaggtttctactaaggaaattc |
39268019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 39267352 - 39267405
Alignment:
| Q |
33 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
86 |
Q |
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| T |
39267352 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
39267405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 39267185 - 39267226
Alignment:
| Q |
386 |
gtttggttctattgttctttccaccactgaccctcttgaaaa |
427 |
Q |
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| T |
39267185 |
gtttggttctatcgttctttccaccactgaccctcttgaaaa |
39267226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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