View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_71 (Length: 413)
Name: NF1498_high_71
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 3110593 - 3110980
Alignment:
| Q |
16 |
gtgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttcatttctccatt |
115 |
Q |
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| T |
3110593 |
gtgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttcatttctccatt |
3110692 |
T |
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| Q |
116 |
attgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaactttt |
215 |
Q |
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| T |
3110693 |
attgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaactttt |
3110792 |
T |
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| Q |
216 |
gatgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgc |
315 |
Q |
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| T |
3110793 |
gatgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctggttcaagaaacaataactgtccctttccaggattgatgc |
3110892 |
T |
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| Q |
316 |
tacttagagatatcacaagcatatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcattcat |
403 |
Q |
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| T |
3110893 |
tacttagagatatcacaagcatatcattatcattcaaacctaattctcttcggactgatttgcgcaacaacttcctcttctcattcat |
3110980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 135 - 399
Target Start/End: Complemental strand, 26270640 - 26270376
Alignment:
| Q |
135 |
ttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
234 |
Q |
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| T |
26270640 |
ttgctattgctatccttcatcattggcaacaactttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
26270541 |
T |
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| Q |
235 |
aatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaag |
334 |
Q |
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| T |
26270540 |
tatcatcttgaaatgattcattttctaatactgactttgctgattcaagaaacaataactgaccctttccaggattgatgctacttagagatatcacaag |
26270441 |
T |
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| Q |
335 |
catatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcat |
399 |
Q |
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| T |
26270440 |
catatcattatcattcaaacctaattctctacggactgatgcacgcaataacttcctcttttcat |
26270376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 26271181 - 26271092
Alignment:
| Q |
16 |
gtgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttca |
105 |
Q |
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| T |
26271181 |
gtgacaagaaacttacaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcaaaattttcagagactgtttca |
26271092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 403
Target Start/End: Complemental strand, 44063093 - 44062947
Alignment:
| Q |
257 |
ttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaagcatatcattatcattcaaacct |
356 |
Q |
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| T |
44063093 |
ttctactactgagcttgctgattcaagaagcaatagctggccctttccggggttgatgctacttagagatattacaagcatatcattgtcagttaatccc |
44062994 |
T |
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| Q |
357 |
aattctcttcggaccgatttgcgcaacaacttcctcttctcattcat |
403 |
Q |
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| T |
44062993 |
atttcttttcggaccgattctcgcaacaactgccttttctcaatcat |
44062947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 44063451 - 44063387
Alignment:
| Q |
36 |
cttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattg |
100 |
Q |
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| T |
44063451 |
cttttaacataatccaccttgttacttttggatccaacagagccaatgagaactttgagagattg |
44063387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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