View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_74 (Length: 410)

Name: NF1498_high_74
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_74
NF1498_high_74
[»] chr7 (12 HSPs)
chr7 (1-393)||(8450932-8451337)
chr7 (1-275)||(8428225-8428505)
chr7 (271-347)||(8427981-8428054)
chr7 (196-275)||(8408887-8408962)
chr7 (346-393)||(8427793-8427840)
chr7 (18-94)||(8437227-8437304)
chr7 (29-121)||(8481083-8481176)
chr7 (18-87)||(8414025-8414094)
chr7 (24-95)||(8408700-8408771)
chr7 (229-272)||(8414243-8414284)
chr7 (218-252)||(7916035-7916069)
chr7 (75-121)||(8349982-8350028)
[»] scaffold0060 (1 HSPs)
scaffold0060 (215-253)||(73140-73178)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 8450932 - 8451337
Alignment:
Q  1 acaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8450932 acaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattattt 8451031  T
Q  101 ctattcggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatatcatattatgt- 199  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8451032 ttatccggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatatcatattatgtt 8451131  T
Q  200 ------------ttgatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaattggagatgttgca 287  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8451132 tgaattcaatgtttgatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaattggagatgttgca 8451231  T
Q  288 tttcagctggaacttcctcctccttccagcagaattcatccagtgtttcatgtttcgcaggtctctttcatgaggacgccacttgggaagattacactga 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8451232 tttcagctggaacttcctcctccttccagcagaattcatccagtgtttcatgtttcgcaggtctctttcatgaggacgccacttgggaagattacactga 8451331  T
Q  388 cattat 393  Q
    ||||||    
T  8451332 cattat 8451337  T

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Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8428505 - 8428225
Alignment:
Q  1 acaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8428505 acaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattattt 8428406  T
Q  101 ctattcggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatatcatatt----- 195  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||         
T  8428405 ttatccggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatga---taatctaaatgtatcatattatgtt 8428309  T
Q  196 --------atgtttgatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt 275  Q
            |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8428308 tcaattcaatgtttgatgagacaatat----tgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt 8428225  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 8428054 - 8427981
Alignment:
Q  271 caattggagatgttgcatttcagctggaacttcctcctccttccagcagaattcatccagtgtttcatgtttcgcag 347  Q
    ||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  8428054 caattggagatgttgcatttcagctggaacttcctcct---tccagtagaattcatccagtgtttcatgtttcgcag 8427981  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 8408887 - 8408962
Alignment:
Q  196 atgtttgatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt 275  Q
    |||||||||||||||||| |    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8408887 atgtttgatgagacaataca----gatattgagtttcttttattttataataataattgttaaattttaaatgttcaatt 8408962  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 8427840 - 8427793
Alignment:
Q  346 aggtctctttcatgaggacgccacttgggaagattacactgacattat 393  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  8427840 aggtctctttcatgaggacgccacttgggaagattacattgacattat 8427793  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8437227 - 8437304
Alignment:
Q  18 aaaaagtataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtattta 94  Q
    ||||| ||||| ||||||| |||||||||||||||| ||| ||||||||| || ||||||||||||||||| ||||||    
T  8437227 aaaaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta 8437304  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 8481176 - 8481083
Alignment:
Q  29 tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttctattcggctcaatatcttat 121  Q
    ||||||||||| |||||||||||||| |  | |||||| ||| ||||| ||||||| ||||||||||| ||||  || ||||||||||||||||    
T  8481176 tagaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatcttat 8481083  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8414025 - 8414094
Alignment:
Q  18 aaaaagtataatagaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgatt 87  Q
    ||||| ||||||||||||| ||||||||||||| ||| || |||||||||||||  |||||||||||||||    
T  8414025 aaaaaatataatagaacaaaataatgttatttgattgattatcatgtgagcatt-cacatatgatatgatt 8414094  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 8408700 - 8408771
Alignment:
Q  24 tataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtatttat 95  Q
    ||||||||||||| ||||| |||||||||| ||| | | |||||||| ||||| |||||||||||||||||||    
T  8408700 tataatagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttat 8408771  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 8414243 - 8414284
Alignment:
Q  229 tttctttcattttataataataattgttaaattttaaatgttca 272  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  8414243 tttctttcattttataataataattgttaa--tttaaatgttca 8414284  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 7916069 - 7916035
Alignment:
Q  218 ctgatattgagtttctttcattttataataataat 252  Q
    |||||||||||||||||| ||||||||||||||||    
T  7916069 ctgatattgagtttcttttattttataataataat 7916035  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 8349982 - 8350028
Alignment:
Q  75 atatgatatgattgtatttattatttctattcggctcaatatcttat 121  Q
    ||||||||||||||||||||| ||||  || ||||||||||||||||    
T  8349982 atatgatatgattgtatttatcattttaatccggctcaatatcttat 8350028  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 73178 - 73140
Alignment:
Q  215 atactgatattgagtttctttcattttataataataatt 253  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  73178 atactgatattgaatttctttcattttataataagaatt 73140  T

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