View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_76 (Length: 409)

Name: NF1498_high_76
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_76
NF1498_high_76
[»] chr2 (2 HSPs)
chr2 (144-316)||(9216470-9216642)
chr2 (9-128)||(38992699-38992818)
[»] chr3 (3 HSPs)
chr3 (8-128)||(45903307-45903427)
chr3 (81-128)||(41570068-41570115)
chr3 (81-123)||(17229749-17229790)
[»] chr6 (3 HSPs)
chr6 (8-122)||(23594609-23594723)
chr6 (8-125)||(26377803-26377920)
chr6 (16-125)||(14277309-14277417)
[»] chr7 (5 HSPs)
chr7 (11-122)||(14792430-14792541)
chr7 (9-122)||(4926192-4926305)
chr7 (16-122)||(19680936-19681042)
chr7 (15-85)||(41985279-41985349)
chr7 (8-84)||(7260342-7260418)
[»] chr1 (7 HSPs)
chr1 (8-128)||(19596058-19596178)
chr1 (8-122)||(46336308-46336422)
chr1 (11-121)||(32495817-32495927)
chr1 (18-125)||(43632841-43632948)
chr1 (8-125)||(43997241-43997358)
chr1 (80-123)||(38953658-38953700)
chr1 (80-123)||(30198297-30198339)
[»] chr5 (3 HSPs)
chr5 (11-122)||(9625524-9625635)
chr5 (8-122)||(39305548-39305662)
chr5 (8-90)||(17539992-17540074)
[»] chr4 (3 HSPs)
chr4 (16-122)||(12240563-12240669)
chr4 (8-122)||(49620580-49620694)
chr4 (15-125)||(23666682-23666792)
[»] chr8 (1 HSPs)
chr8 (8-125)||(13083680-13083798)
[»] scaffold1603 (1 HSPs)
scaffold1603 (8-89)||(911-992)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 144 - 316
Target Start/End: Complemental strand, 9216642 - 9216470
Alignment:
Q  144 ataaattcataataagaaagagaaaaagttttcctggaatcttggtcttgttgcaacaatatgagagtgacattcacgatctcacctccacctctctctc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9216642 ataaattcataataagaaagagaaaaagttttcctggaatcttggtcttgttgcaacaatatgagagtgacattcacgatctctcctccacctctctctc 9216543  T
Q  244 ataaactttctctctcataagatactatattttctctttcaaacctcccctatttcggatcaccacacgaccg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9216542 ataaactttctctctcataagatactatattttctctttcaaacctcccctatttcggatcaccacacgaccg 9216470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 38992818 - 38992699
Alignment:
Q  9 agcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatatt 108  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38992818 agcacagatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatatt 38992719  T
Q  109 acagcagcaaatcctcaccc 128  Q
    ||||||| ||||||||||||    
T  38992718 acagcaggaaatcctcaccc 38992699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 45903427 - 45903307
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45903427 cagcacagatttcaacaattttacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 45903328  T
Q  108 tacagcagcaaatcctcaccc 128  Q
    |||||||| ||||||||||||    
T  45903327 tacagcaggaaatcctcaccc 45903307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 41570068 - 41570115
Alignment:
Q  81 ctacagcgtgcaactgcgtgtaaatattacagcagcaaatcctcaccc 128  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41570068 ctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcaccc 41570115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 17229749 - 17229790
Alignment:
Q  81 ctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  17229749 ctacagcgtgcaactgcgtgtaaata-tacaacagcaaatcct 17229790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 23594609 - 23594723
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23594609 cagcacaaatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 23594708  T
Q  108 tacagcagcaaatcc 122  Q
    |||||||| ||||||    
T  23594709 tacagcaggaaatcc 23594723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 26377920 - 26377803
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377920 cagcacaaatttcaacaatttcacacaatgtcagatcttaaccattcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 26377821  T
Q  108 tacagcagcaaatcctca 125  Q
    |||||||| |||||||||    
T  26377820 tacagcaggaaatcctca 26377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 14277309 - 14277417
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||    
T  14277309 atttcaacaatttaacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctatagcgtgcaactaagtgtaaata-tacagcag 14277407  T
Q  116 caaatcctca 125  Q
     |||||||||    
T  14277408 gaaatcctca 14277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 14792430 - 14792541
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14792430 cacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 14792529  T
Q  111 agcagcaaatcc 122  Q
    ||||||||||||    
T  14792530 agcagcaaatcc 14792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 4926192 - 4926305
Alignment:
Q  9 agcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatatt 108  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  4926192 agcacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtacaacagctacagcgtacaactgcgtgtaaatatt 4926291  T
Q  109 acagcagcaaatcc 122  Q
    ||||||| ||||||    
T  4926292 acagcaggaaatcc 4926305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 19681042 - 19680936
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    |||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |    
T  19681042 attttaacaatttcacacaatatcaaatcttaaccattcatttcagatcagacggtgtagaacagctacagcgtataactgcgggtaaatattacagctg 19680943  T
Q  116 caaatcc 122  Q
     ||||||    
T  19680942 gaaatcc 19680936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 41985349 - 41985279
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctaca 85  Q
    |||||||||||||||| ||||||||| ||||| |||| ||||||||||||| |||||| ||||||||||||    
T  41985349 gatttcaacaatttcatacaatgtcagatcttgaccgctcacttcagatcaaacggtgcagaacagctaca 41985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 7260342 - 7260418
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctac 84  Q
    ||||| |||||| |||||||||| ||||||||| ||||||||| |||| || |||||||||||| || |||||||||    
T  7260342 cagcaaagattttaacaatttcatacaatgtcagatcttaaccattcattttagatcagacggtttaaaacagctac 7260418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 19596058 - 19596178
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19596058 cagcacagatttcaacaattttacacaatatcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgtaactgcgtgtaaatat 19596157  T
Q  108 tacagcagcaaatcctcaccc 128  Q
    |||||||| ||||||||||||    
T  19596158 tacagcaggaaatcctcaccc 19596178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 46336422 - 46336308
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46336422 cagcacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatat 46336323  T
Q  108 tacagcagcaaatcc 122  Q
    |||||||| ||||||    
T  46336322 tacagcaggaaatcc 46336308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 32495817 - 32495927
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32495817 cacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 32495916  T
Q  111 agcagcaaatc 121  Q
    || || |||||    
T  32495917 agtagaaaatc 32495927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 43632948 - 43632841
Alignment:
Q  18 ttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcagca 117  Q
    ||||||||||||||||||||||| |||||||||||||| || | |||||| |||| |||||| |||||||||||||||||||||||   ||||||||| |    
T  43632948 ttcaacaatttcacacaatgtcagatcttaaccgttcattttaaatcagatggtgcagaacaactacagcgtgcaactgcgtgtaatatttacagcagaa 43632849  T
Q  118 aatcctca 125  Q
    ||||||||    
T  43632848 aatcctca 43632841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 43997241 - 43997358
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||| | |||| ||||||| | |||||||||||||   |    
T  43997241 cagcacatatttcaacaatttcacacaatatcagatcataaccgttcatttcagatcagacggtgcaaaacaactacagcctacaactgcgtgtaatatt 43997340  T
Q  108 tacagcagcaaatcctca 125  Q
    |||||||| |||||||||    
T  43997341 tacagcagaaaatcctca 43997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 38953658 - 38953700
Alignment:
Q  80 gctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  38953658 gctacagcgtgcaactgcgtgtaaat-ttacagcagcaaatcct 38953700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 30198297 - 30198339
Alignment:
Q  80 gctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  30198297 gctacagcgtgcaactgcgtgtaaat-ttacaccagcaaatcct 30198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 9625524 - 9625635
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9625524 cacagatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagattagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattac 9625623  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  9625624 agcagtaaatcc 9625635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 39305548 - 39305662
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  39305548 cagcacaaatttcaacaatttcatacaatgtcaaatcttaaccgttcacttcagatcagacggtatagaacagctacggcgtgcaactgcgtgtaaatat 39305647  T
Q  108 tacagcagcaaatcc 122  Q
    |||||||| ||||||    
T  39305648 tacagcaggaaatcc 39305662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 17540074 - 17539992
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtg 90  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17540074 cagcacaaatttcaacaatttcacacaatgtcaaatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtg 17539992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 12240669 - 12240563
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12240669 atttcaacaatttcacacaatgtcagatcttaatcgttcacttcagatcagacggtgtagaacagctacaacgtgcaactgcgtgtaaatattacagcag 12240570  T
Q  116 caaatcc 122  Q
     ||||||    
T  12240569 gaaatcc 12240563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 49620694 - 49620580
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatat 107  Q
    ||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  49620694 cagcacaaatttcaacaatttcacacaatgtcagatcttaacgtttcacttcagatcagacggtgtagaacaactacaacgtacaactgcatgtaaatat 49620595  T
Q  108 tacagcagcaaatcc 122  Q
    |||||||| ||||||    
T  49620594 tacagcaggaaatcc 49620580  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 23666682 - 23666792
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagca 114  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | |||| |||||| |  ||||||| |||||   ||||||||    
T  23666682 gatttcaacaatttcacacaatgtcagatcttgaccgttcacttcaaatcagacggtgcaaaacaactacagtggacaactgcctgtaatatttacagca 23666781  T
Q  115 gcaaatcctca 125  Q
    | |||||||||    
T  23666782 ggaaatcctca 23666792  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13083680 - 13083798
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaa-ata 106  Q
    |||||| |||||||||||||||||||||||||| |||| | | ||||| |||||||||| ||||| ||||||||||||| |||||||||||||||| ||     
T  13083680 cagcacggatttcaacaatttcacacaatgtcagatctgagctgttcagttcagatcaggcggtgcagaacagctacagtgtgcaactgcgtgtaatatt 13083779  T
Q  107 ttacagcagcaaatcctca 125  Q
    ||||||||| |||||||||    
T  13083780 ttacagcagaaaatcctca 13083798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 992 - 911
Alignment:
Q  8 cagcacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgt 89  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||  ||||||| ||||||||    
T  992 cagcacggatttcaacaattttacacaatgtcagatcttgaccgttcacttcagatcagacggtacagaacagttacagcgt 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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