View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_78 (Length: 408)
Name: NF1498_high_78
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_78 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 32899015 - 32899387
Alignment:
| Q |
7 |
ggagaagcaaagggtggtggttgacagtggtggtggtctcaacatgggaggattaggttcttctgagcttgattgcatgtggaactattaattaaggatt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32899015 |
ggaggagcaaagggtggtggttgacagtggtggtggtctcaacatgggaggattaggttcttctgagcttgattgcatgtggaactattaattaaggatt |
32899114 |
T |
|
| Q |
107 |
atgagtagtagatttaattatgtgtctatgatttcaatcaaagattttaattaggatttaacttgtttaaggttgcctaggtttgattgtactagattgt |
206 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32899115 |
atgattagtagatttaattatttgtctatgatttcaatcaaatattttaattaggatttaacttgtttaaggttgcgtaggtttgattgtactagattgt |
32899214 |
T |
|
| Q |
207 |
tgttactactaggttttggtgtttacaagggtagttttggaattgtgttttgttatgtgttagggagccataggatgtacctatggtggatatttataat |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32899215 |
tgttactactaggttttggtgtttccaagggtagttttggaattgtgttttgttatgtgttagggagccataggatgtacctatggtggatatttataat |
32899314 |
T |
|
| Q |
307 |
ttattattataagcatgtgttatttagaagtgtttgaattctgtatttttaaattgactaaagtacgtctatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32899315 |
ttattattataagcatgtgttatttagaagtgtttgaattctgtatttttaaattgactaaagtacgtctatg |
32899387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University