View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_79 (Length: 402)
Name: NF1498_high_79
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_79 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 92 - 383
Target Start/End: Original strand, 24115428 - 24115719
Alignment:
| Q |
92 |
gttttgatttttaaagctataagtttaactcacatctatgtcaagaagaataagctcaatggagttgaccctttcaggcaacagctcgctctcaacgttc |
191 |
Q |
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| T |
24115428 |
gttttgatttttaaagctataagtttaactcacatctatgtcaagaagaataagctcaatggagttgacccttccaggcaacagctcgctctcaacgttc |
24115527 |
T |
|
| Q |
192 |
cacattcttatgacccgaaacttcaccctccaatccatcctaccagttctcagagcattcaaactgctaaagagtatcaacattttgatctgatgcaaga |
291 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
24115528 |
cacattcttatgacccgaaccttcaccctccaatccatcctaccagttttcagagcattcaaactgctaaacggtatcaacattttgatctggtgcaaga |
24115627 |
T |
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| Q |
292 |
gtctatttttgttggcaagagtttaataacagactacgaagaagataattatatggttaaacagggttaagtgttaacatgaaagaagataa |
383 |
Q |
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| T |
24115628 |
gtctatttttgttggcaagagtttaataatagactacgcagaagataattatatggttaaacagggttaagtgttaacatgaaagaagataa |
24115719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 20557741 - 20557637
Alignment:
| Q |
132 |
tcaagaagaataagctcaatggagttgaccctttcaggcaacagctcgctctcaacgttccacattcttatgacccgaaacttcaccctccaatccatcc |
231 |
Q |
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||||||||||| || || || ||||||||||| ||| || | ||| |||||||| |||||||||||||||||| || | |||||||||| ||||||| |
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| T |
20557741 |
tcaagaagaatgagttccattgagttgaccctcccagaaaaaatctcactctcaacagtccacattcttatgaccctaaccctcaccctccagtccatcc |
20557642 |
T |
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| Q |
232 |
tacca |
236 |
Q |
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| T |
20557641 |
tacca |
20557637 |
T |
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