View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_80 (Length: 400)

Name: NF1498_high_80
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_80
NF1498_high_80
[»] chr6 (8 HSPs)
chr6 (176-386)||(10821027-10821237)
chr6 (176-378)||(10814787-10814989)
chr6 (176-304)||(19490840-19490968)
chr6 (191-329)||(11704022-11704160)
chr6 (175-378)||(4097768-4097971)
chr6 (250-323)||(18615287-18615360)
chr6 (176-298)||(14271731-14271853)
chr6 (176-374)||(4312276-4312474)
[»] chr1 (17 HSPs)
chr1 (203-386)||(22666190-22666373)
chr1 (176-378)||(30805843-30806045)
chr1 (194-386)||(15787764-15787956)
chr1 (176-378)||(26897955-26898157)
chr1 (176-383)||(17496641-17496848)
chr1 (176-381)||(12669095-12669300)
chr1 (176-376)||(37283329-37283529)
chr1 (177-335)||(19003175-19003333)
chr1 (256-381)||(22638297-22638422)
chr1 (273-371)||(17103336-17103434)
chr1 (192-383)||(19019127-19019316)
chr1 (300-378)||(17316399-17316477)
chr1 (176-225)||(17316537-17316586)
chr1 (176-303)||(12397713-12397840)
chr1 (180-374)||(33438831-33439027)
chr1 (207-367)||(18932707-18932867)
chr1 (176-229)||(24006393-24006446)
[»] chr2 (27 HSPs)
chr2 (176-386)||(29409518-29409727)
chr2 (180-384)||(21748510-21748714)
chr2 (200-386)||(16917403-16917588)
chr2 (176-323)||(19564549-19564696)
chr2 (176-379)||(25916599-25916801)
chr2 (256-378)||(16587098-16587220)
chr2 (176-383)||(27315638-27315845)
chr2 (176-323)||(21548350-21548497)
chr2 (272-386)||(45572242-45572356)
chr2 (272-386)||(45575909-45576023)
chr2 (272-386)||(45579576-45579690)
chr2 (272-386)||(45583243-45583357)
chr2 (272-386)||(45586910-45587024)
chr2 (272-386)||(45590577-45590691)
chr2 (272-386)||(45594244-45594358)
chr2 (272-386)||(45597911-45598025)
chr2 (272-386)||(45601578-45601692)
chr2 (272-386)||(45605245-45605359)
chr2 (272-386)||(45608912-45609026)
chr2 (272-386)||(45612579-45612693)
chr2 (272-386)||(45616246-45616360)
chr2 (176-378)||(27765607-27765809)
chr2 (176-304)||(22311850-22311978)
chr2 (176-310)||(17417505-17417638)
chr2 (256-378)||(19878061-19878183)
chr2 (176-269)||(45621995-45622088)
chr2 (350-378)||(25564009-25564037)
[»] chr7 (6 HSPs)
chr7 (176-366)||(17891370-17891559)
chr7 (176-387)||(1777065-1777275)
chr7 (181-378)||(32957500-32957696)
chr7 (214-340)||(10646817-10646943)
chr7 (176-268)||(10983836-10983927)
chr7 (257-378)||(1782985-1783106)
[»] chr4 (8 HSPs)
chr4 (183-373)||(11449398-11449588)
chr4 (191-378)||(11545125-11545311)
chr4 (176-379)||(18445834-18446037)
chr4 (176-321)||(19555373-19555518)
chr4 (176-328)||(17474156-17474308)
chr4 (174-209)||(21588468-21588503)
chr4 (250-305)||(22222781-22222836)
chr4 (273-374)||(11419707-11419808)
[»] scaffold0053 (1 HSPs)
scaffold0053 (176-379)||(27781-27984)
[»] chr5 (11 HSPs)
chr5 (176-379)||(24492433-24492636)
chr5 (176-386)||(30608247-30608462)
chr5 (176-378)||(26013622-26013824)
chr5 (176-381)||(6998920-6999125)
chr5 (256-378)||(27499783-27499905)
chr5 (258-374)||(22826123-22826236)
chr5 (176-268)||(31730449-31730539)
chr5 (256-365)||(37336612-37336721)
chr5 (214-314)||(12859874-12859973)
chr5 (256-324)||(26335618-26335685)
chr5 (176-232)||(28760401-28760457)
[»] chr3 (8 HSPs)
chr3 (175-386)||(27485950-27486161)
chr3 (176-378)||(13291691-13291893)
chr3 (176-340)||(19306974-19307138)
chr3 (183-378)||(10928864-10929059)
chr3 (285-378)||(17119027-17119120)
chr3 (292-337)||(17637545-17637590)
chr3 (282-323)||(46348977-46349018)
chr3 (251-315)||(15331383-15331447)
[»] chr8 (6 HSPs)
chr8 (176-374)||(24277194-24277390)
chr8 (198-378)||(23520977-23521157)
chr8 (206-378)||(28890221-28890393)
chr8 (261-378)||(23584916-23585033)
chr8 (176-232)||(5826211-5826267)
chr8 (176-232)||(5828810-5828866)
[»] scaffold0650 (1 HSPs)
scaffold0650 (176-378)||(5789-5992)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 176 - 386
Target Start/End: Original strand, 10821027 - 10821237
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  10821027 atttgagagacgtcggagaagagtgtcagcgcattaagagtcattgaaaagctttgaatcatggatgttagaccattgcctgatatggataatttcgttg 10821126  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  10821127 aatagccatttgaaattcttttgctgaaactggaattattcgttcattttctttgtccttaaagtcctttttccgtttctacacgtggtcagaagaagat 10821226  T
Q  376 aaaattgtact 386  Q
    |||||||||||    
T  10821227 aaaattgtact 10821237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 378
Target Start/End: Complemental strand, 10814989 - 10814787
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||  ||||| | ||||| | |  |||||||||||||||||||  |||     
T  10814989 atttgagagatgttggagaagaatgtcaacgtattaagagtcattgagaagcttcaaatcaagaatgtttgccctttgcttgatatggataattccgtta 10814890  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    | ||| ||||||||| |||||||| ||||||| |||||| |||||||| ||||| ||||| ||||  ||| |  ||||||||||||||||||||  ||||    
T  10814889 attagacatttgaaattcctttgcagaaactgaaattatccgttcattctctttgtcctttaagttctttgtttgtttctacacgtggtcagaatgagac 10814790  T
Q  376 aaa 378  Q
    |||    
T  10814789 aaa 10814787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 19490840 - 19490968
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| | |||  |||| ||||||||||| |||||||||||| ||| |||||| ||| |||   | ||||| ||||||||||||||||| ||    
T  19490840 atttgagagacgttgcagagaagtgccagcgcattaagagtcattgagaatcttcgaatcaaggacgttgagccattgcatgatatggataattttgatg 19490939  T
Q  276 aatagccatttgaaaatcctttgctgaaa 304  Q
     |||  |||||||||||||||||||||||    
T  19490940 gatattcatttgaaaatcctttgctgaaa 19490968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 329
Target Start/End: Complemental strand, 11704160 - 11704022
Alignment:
Q  191 gagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaa 290  Q
    ||||||||| ||  |||||| | |||| ||| |||||||  ||||| | | ||| || |||||| | |||| |||||| ||||||| |||  ||||||||    
T  11704160 gagaagagtatcgccgcatttagagtcgttgtgaagcttcaaatcaagcacgttggattattgcctaatatagataatgttgttgattagatatttgaaa 11704061  T
Q  291 atcctttgctgaaactggaattattcgttcattttcttt 329  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  11704060 atcctttgctgaaactggaattattcgttcattctcttt 11704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 378
Target Start/End: Complemental strand, 4097971 - 4097768
Alignment:
Q  175 aatttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgtt 274  Q
    |||| ||||||||| |||||||||||||| |||||||| |||| |||| ||  ||| ||||| ||| ||| |   ||||| ||||||||||||| |  ||    
T  4097971 aattcgagagacgttggagaagagtgtcaacgcattaagagtcgttgataaattttaaatcaaggacgttgggaaattgcctgatatggataatgtcttt 4097872  T
Q  275 gaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
    || |||  |||||||| ||||||| ||||  |||||||||  ||||||| ||||| ||||| ||||  ||| |   |||||||| ||||||||| ||| |    
T  4097871 gattagaaatttgaaattcctttgttgaatatggaattatcggttcattctctttgtccttgaagttctttgtttatttctacatgtggtcagatgaaca 4097772  T
Q  375 caaa 378  Q
    ||||    
T  4097771 caaa 4097768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 18615360 - 18615287
Alignment:
Q  250 attgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcatt 323  Q
    ||||| |||||| ||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||| ||||    
T  18615360 attgcctgatattgataattctgttggatagtcattcgaaaatcctttgctgaaactggaagtattcgtgcatt 18615287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 14271731 - 14271853
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||| || ||||||||||| ||  | || || |||| |||||||||||  ||||| ||||| |  || |||||| ||||||||||||| |||||    
T  14271731 atttgagagatgttggagaagagtggcattgtataaagagtcgttgagaagcttcaaatcaaggatgatgaaccattgctagatatggataattgtgttg 14271830  T
Q  276 aatagccatttgaaaatcctttg 298  Q
     |||| |||| ||||||||||||    
T  14271831 gatagtcattcgaaaatcctttg 14271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 4312276 - 4312474
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||| ||| |||||||||| ||| | | ||||||||||||  ||||| | | |||   |  |||  ||||||||||| ||| ||||    
T  4312276 atttgagagacgttggagtagaatgtcagcgcagtaagacttattgagaagcttcaaatcaagaacgttgaccctttgtctgatatggatagtttcgttg 4312375  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
    | ||  ||||||||| || |||||  |||||||||||||  | ||||||| |||  |||| |||| |||| |  ||||||||| ||||| |||||||||    
T  4312376 attaaacatttgaaattcttttgcaaaaactggaattatctggtcattttatttgcccttgaagttatttgtttgtttctacatgtggttagaagaaga 4312474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 386
Target Start/End: Original strand, 22666190 - 22666373
Alignment:
Q  203 agcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgctga 302  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||  | |||||| ||||||||| |  || ||| |    
T  22666190 agcgcattaagagtcattgagaagctttgaatcaaggatgttagaccattgcctgacatggataatttcatcgaatagtcatttgaaattttttcgctta 22666289  T
Q  303 aactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaaattgtact 386  Q
    ||||||||||||  ||||||| ||||| ||||| ||||  ||| | |||||||||||||||| |||||||||||||||||||||    
T  22666290 aactggaattatctgttcattctctttgtccttgaagttctttgttcgtttctacacgtggttagaagaagacaaaattgtact 22666373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 378
Target Start/End: Complemental strand, 30806045 - 30805843
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||| ||||  ||||| |||||||||||||||| |||| |||||||||||  ||||| |||  || ||| ||||| ||||||||||||| | ||||    
T  30806045 atttgagatacgtttgagaatagtgtcagcgcattaagagtcgttgagaagcttcaaatcaaggacattggaccattgcctgatatggataatgtcgttg 30805946  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    | ||| |||| |||| ||||||  ||||||| ||||||| |||||||| ||||| ||||| ||||  ||| |  |||||||||||||| |||||||||||    
T  30805945 attagacattcgaaattcctttcatgaaactagaattatccgttcattgtctttctccttgaagttctttgtttgtttctacacgtggccagaagaagac 30805846  T
Q  376 aaa 378  Q
    |||    
T  30805845 aaa 30805843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 386
Target Start/End: Complemental strand, 15787956 - 15787764
Alignment:
Q  194 aagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatc 293  Q
    |||||||| ||| |||||| ||||||||||||||||  ||||| ||||||| | | ||||| | || || |||||||||||| |||| |||| |||||||    
T  15787956 aagagtgttagcacattaagagtcattgagaagcttcaaatcaaggatgttgggccattgcctaatttgaataattttgttggatagtcattcgaaaatc 15787857  T
Q  294 ctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaaattgtact 386  Q
    ||||| ||||||| ||| |||   |||||| ||||| ||||| ||||| ||| |  ||||||||||||| |||||||||||||||||| ||||    
T  15787856 ctttgttgaaactagaagtatattttcattctctttgtccttgaagtcctttatttgtttctacacgtgatcagaagaagacaaaattatact 15787764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 378
Target Start/End: Original strand, 26897955 - 26898157
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| | ||||| |||||| |||||||| |||| ||||||| |||| |||||  |||||||||| ||||| | ||||||||||| |  |||    
T  26897955 atttgagagacgttgaagaagcgtgtcaacgcattaagagtcgttgagaaactttaaatcaaagatgttagaccattgccttatatggataatctcattg 26898054  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    | ||| ||||||||| | |||| |||||||| |||||||| ||| ||| | ||| |||||  |||  ||| |  ||||||||||||||||||||||||||    
T  26898055 attagacatttgaaatttctttactgaaactagaattatttgttaattatttttgtccttgcagttctttgtatgtttctacacgtggtcagaagaagac 26898154  T
Q  376 aaa 378  Q
    |||    
T  26898155 aaa 26898157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 383
Target Start/End: Complemental strand, 17496848 - 17496641
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||| | ||||||||||||||||||||||| |||| |||| ||||||  ||||| | |   |||   ||||| ||||||||||||||| ||||    
T  17496848 atttgagagacattggagaagagtgtcagcgcattaagagtcgttgaaaagcttcaaatcaagaacaatagggcattgcctgatatggataatttcgttg 17496749  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    ||||| ||||||||| ||||||| |||||||| || | |  |||| || ||||| ||||| || |  ||| |  ||||||||| ||||||||||||||||    
T  17496748 aatagtcatttgaaattcctttgttgaaactgaaaatttctgttctttctctttgtccttgaatttctttgtatgtttctacatgtggtcagaagaagac 17496649  T
Q  376 aaaattgt 383  Q
    ||||||||    
T  17496648 aaaattgt 17496641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 381
Target Start/End: Complemental strand, 12669300 - 12669095
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| || ||||||||||| |||||| | |||| |||||||||||  ||||| ||| ||| |   ||||| ||||||||||||||  ||||    
T  12669300 atttgagagacgttggtgaagagtgtcaacgcatttagagtcgttgagaagcttcaaatcaaggacgttgggtaattgcctgatatggataattcggttg 12669201  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    ||||| ||||  ||| || |||  ||||||||||| ||| | |||||| ||||| ||||| ||||  ||| || |||| | || ||||||||||||||||    
T  12669200 aatagtcattcaaaattcttttattgaaactggaagtatccattcattctctttgtccttgaagttctttgtctgtttttgcatgtggtcagaagaagac 12669101  T
Q  376 aaaatt 381  Q
    ||||||    
T  12669100 aaaatt 12669095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 376
Target Start/End: Complemental strand, 37283529 - 37283329
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||||||||||| ||||| || ||||||||||||||||   |||| ||| |||   | |||||  |||||| |||||| |||||    
T  37283529 atttgagagacgttggagaagagtgtcaacgcataaagagtcattgagaagcttcagatcaaggacgttgatccattgccggatatgaataattctgttg 37283430  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||||||||  |||| | ||||||||| | |||| ||| | |||||| |  ||  | || ||||||||| || ||||||||||||||||||||||||||    
T  37283429 gatagccattcaaaaaccttttgctgaagcaggaagtatacattcattcttattgcctttgaagtcatttgtctgtttctacacgtggtcagaagaagac 37283330  T
Q  376 a 376  Q
    |    
T  37283329 a 37283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 19003333 - 19003175
Alignment:
Q  177 tttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttga 276  Q
    |||||||||| | | ||||||||| | |  |||||| |||| |||||||||||  ||||| ||||||||||| ||| | | ||||| ||||| | |||||    
T  19003333 tttgagagacattgaagaagagtggcggtacattaagagtcgttgagaagcttcaaatcaaggatgttagaccattacctaatatgaataatgtcgttga 19003234  T
Q  277 atagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt 335  Q
     ||| ||||||||| | ||||||| |||||| |||||| |||||||| ||||| |||||    
T  19003233 ttagacatttgaaatttctttgctaaaactgaaattatccgttcattctctttgtcctt 19003175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 22638297 - 22638422
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttct 355  Q
    ||||||| |||||||||||| |||| ||||||||||||||||| |||||| |||| ||| |||||||| |  ||  |||| |||| |||| || ||||||    
T  22638297 tgatatgcataattttgttggatagtcatttgaaaatcctttgttgaaacaggaaatatccgttcattcttattgcccttgaagttatttgtctgtttct 22638396  T
Q  356 acacgtggtcagaagaagacaaaatt 381  Q
    ||| || | |||||||| ||||||||    
T  22638397 acatgtagacagaagaacacaaaatt 22638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 17103434 - 17103336
Alignment:
Q  273 ttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaaga 371  Q
    |||||||| ||||||||| | |||||||| ||||||||||||  ||||||| ||||||||||||||||  ||| || || |||||| ||||| ||||||    
T  17103434 ttgaatagacatttgaaatttctttgctgcaactggaattatctgttcattctctttatccttaaagttctttgtctgtatctacatgtggttagaaga 17103336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 383
Target Start/End: Complemental strand, 19019316 - 19019127
Alignment:
Q  192 agaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaa 291  Q
    ||||||||| || |||||||| | || |||||||| ||  ||||| || |||| |   ||||| |||||||||||||| ||||||||||| ||| ||||     
T  19019316 agaagagtgccaccgcattaagaatcgttgagaagattcaaatcaagggtgtttggtcattgcctgatatggataattctgttgaatagctattcgaaat 19019217  T
Q  292 tcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaaattgt 383  Q
    | ||||||||||| ||||| ||| ||||  | |||| | ||||| ||||  ||| ||  |||||| | |||||||| |||||||||||||||    
T  19019216 ttctttgctgaaattggaagtatccgtt--tattctctgtccttgaagttctttatctatttctatatgtggtcaggagaagacaaaattgt 19019127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 17316477 - 17316399
Alignment:
Q  300 tgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
    ||||||| ||||||||| |||||||||||| ||||||||||   || |  |||||||||| ||||||||||||||||||    
T  17316477 tgaaactagaattattctttcattttctttgtccttaaagttccttgtttgtttctacacatggtcagaagaagacaaa 17316399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 17316586 - 17316537
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaa 225  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  17316586 atttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaa 17316537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 12397713 - 12397840
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| | |||||||||| |  ||||||| |||| |||||||| ||  ||||| ||||||| ||  ||||| ||||||||||||| |  |||    
T  12397713 atttgagagacgttgaagaagagtgttaatgcattaagagtcgttgagaagtttcaaatcaaggatgttggatcattgcctgatatggataatgtcattg 12397812  T
Q  276 aatagccatttgaaaatcctttgctgaa 303  Q
    | ||  ||||||||| || |||||||||    
T  12397813 attaaacatttgaaattcatttgctgaa 12397840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 374
Target Start/End: Original strand, 33438831 - 33439027
Alignment:
Q  180 gagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaata 279  Q
    ||||||||| ||||||||||||||||||||||| | || |||||||  ||  ||||| ||| ||| |   ||||| ||||||||||||| |  |||| ||    
T  33438831 gagagacgttggagaagagtgtcagcgcattaagaatcgttgagaaatttcaaatcaaggaagttgggtcattgcctgatatggataatgtcattgatta 33438930  T
Q  280 gccatttgaaaatccttt--gctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
    | ||||   || |  |||  ||||||||||||||||| || ||||| ||||| ||||| ||||  ||| |  | || ||||||||||||||||||||    
T  33438931 gacattcataatttttttttgctgaaactggaattatccgctcattatctttgtccttgaagttctttgtttgcttatacacgtggtcagaagaaga 33439027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 367
Target Start/End: Complemental strand, 18932867 - 18932707
Alignment:
Q  207 cattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaact 306  Q
    |||||| |||||| |||||| ||  |||||  ||| || ||| ||| | ||||||||||||| | ||||| ||| ||||||||| |||||| ||| ||||    
T  18932867 cattaagagtcatcgagaagtttcaaatcaatgatattggaccatttcctgatatggataatgtcgttgattaggcatttgaaattcctttactgcaact 18932768  T
Q  307 ggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcag 367  Q
    | ||||||  |||||||  |||| ||||| ||||  |||  ||||||| ||| ||||||||    
T  18932767 gtaattatatgttcattcactttgtcctttaagttctttgcccgtttcaacatgtggtcag 18932707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 24006446 - 24006393
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctt 229  Q
    ||||||||||||| ||||||||||||||| ||| | | |||| |||||||||||    
T  24006446 atttgagagacgttggagaagagtgtcagtgcaattagagtcgttgagaagctt 24006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 386
Target Start/End: Original strand, 29409518 - 29409727
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||||||  || ||||||| ||||||||||| |||| ||||||| |||  ||||| ||| ||  | | ||||| ||||||||||||||||||||    
T  29409518 atttgagagacgttagaaaagagtgccagcgcattaagagtctttgagaaacttcaaatcaaggacgtggggc-attgcatgatatggataattttgttg 29409616  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| ||||||||||||||||||||||| || || |||| ||||||| |||||  || ||||||  ||| |||||||||||||||||||||||||||||    
T  29409617 gatagtcatttgaaaatcctttgctgaaattgaaagtatttgttcattctctttgcccctaaagttctttgtccgtttctacacgtggtcagaagaagac 29409716  T
Q  376 aaaattgtact 386  Q
    |||| ||||||    
T  29409717 aaaactgtact 29409727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 384
Target Start/End: Complemental strand, 21748714 - 21748510
Alignment:
Q  180 gagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaata 279  Q
    |||||||||  |||||||||||||||| ||||| |||| |||| ||||||  ||||| ||| ||| ||  ||||| | |||||||||||   ||||||||    
T  21748714 gagagacgttagagaagagtgtcagcgaattaagagtcgttgaaaagcttcaaatcaaggacgttggatcattgcctaatatggataatcccgttgaata 21748615  T
Q  280 gccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaaa 379  Q
    | ||||||||| || ||||||||||||||||| |||  |||||| ||||| | ||| |||| |||| ||  |||||||||||||||||||||||| ||||    
T  21748614 gtcatttgaaattcatttgctgaaactggaataatttattcattctctttgtgcttgaagttatttgtcaatttctacacgtggtcagaagaagataaaa 21748515  T
Q  380 ttgta 384  Q
    |||||    
T  21748514 ttgta 21748510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 386
Target Start/End: Complemental strand, 16917588 - 16917403
Alignment:
Q  200 gtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgc 299  Q
    ||||||||||||| |||| |||||||| ||  ||||| ||||||||||   |||| ||||||| |||| || ||||| ||| ||||||||| ||||||||    
T  16917588 gtcagcgcattaagagtcgttgagaagattcaaatcacggatgttagaactttgcatgatatgtataaattcgttgattagacatttgaaattcctttgc 16917489  T
Q  300 tgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaagaagacaaaattgtact 386  Q
    |||||||| || ||| || ||||| ||||| ||||| ||| || || ||  || |||||||||||||| ||||||| |||||||||||    
T  16917488 tgaaactgaaagtatccgatcattctctttgtccttgaaattccttgtt-tgtatctacacgtggtcaaaagaaga-aaaattgtact 16917403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 323
Target Start/End: Original strand, 19564549 - 19564696
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||| |||||||| ||||||||||| ||| |||| || |||| |||||| ||||  ||||| |||| ||   | |||||| ||||||||||||| |||||    
T  19564549 atttaagagacgttggagaagagtgccagagcataaagagtcgttgagacgcttaaaatcaaggatattgagccattgctagatatggataattatgttg 19564648  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcatt 323  Q
     |||| |||| ||||||||||||||||||| |||| |||  |||||||    
T  19564649 gatagtcattcgaaaatcctttgctgaaacaggaagtatatgttcatt 19564696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 379
Target Start/End: Complemental strand, 25916801 - 25916599
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||| ||  |||||||||| ||||  || || |||| |||||||||||  ||||| ||| |||   | ||||| |||||||||||||| |||||    
T  25916801 atttgagagatgtttgagaagagtgccagcagat-aagagtcgttgagaagcttcaaatcaaggacgttgagccattgcctgatatggataattctgttg 25916703  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| |||| ||||||| |||||||||||| ||| |||  ||||||| |  ||  |||| ||||  ||||   ||||||||||||||||||||||||||    
T  25916702 gatagtcattcgaaaatcatttgctgaaactagaagtatatgttcattcttattgcccttgaagttcttttcttgtttctacacgtggtcagaagaagac 25916603  T
Q  376 aaaa 379  Q
    ||||    
T  25916602 aaaa 25916599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 16587220 - 16587098
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagt-catttttccgtttc 354  Q
    ||||||| |||||| |||||| ||| ||||||||| ||||||||  ||||| ||||||||| |||||| ||||| ||||| |||| |||| ||  ||||     
T  16587220 tgatatgaataattctgttgattagacatttgaaattcctttgcataaactagaattattctttcattctctttgtccttgaagttcattgttt-gtttg 16587122  T
Q  355 tacacgtggtcagaagaagacaaa 378  Q
    |||| |||||||||||||||||||    
T  16587121 tacatgtggtcagaagaagacaaa 16587098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 383
Target Start/End: Original strand, 27315638 - 27315845
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| || ||||||||| ||||||| || | |  |||||||||||   |||| ||| |||| || ||  |  |||||||||||||  ||||    
T  27315638 atttgagagacgttggggaagagtgttagcgcataaagaatggttgagaagcttcagatcaaggacgttaaaccatcaccagatatggataattcagttg 27315737  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| ||||  ||||||| |||||||||| |||| |||  ||||||| |  || ||  | ||||||||| ||  ||||||||| |||||||||||||||    
T  27315738 gatagtcattcaaaaatccgttgctgaaacaggaagtatctgttcattcttcttgtctatgaagtcatttgtctatttctacacatggtcagaagaagac 27315837  T
Q  376 aaaattgt 383  Q
    ||||||||    
T  27315838 aaaattgt 27315845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 21548497 - 21548350
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||| ||| ||||||||||| |||| |||||| |||| |||||||||||  ||| | ||| ||| | | ||||| ||||||||||| |||  | |    
T  21548497 atttgagaggcgttggagaagagtgccagcacattaagagtcgttgagaagcttcaaatgaaggacgttgggccattgcctgatatggatattttcatcg 21548398  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcatt 323  Q
     || | ||||  ||||||||||| ||||||||||| |||| |||||||    
T  21548397 gatggtcattcaaaaatcctttgttgaaactggaagtatttgttcatt 21548350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45572356 - 45572242
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45572356 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45572258  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45572257 aaggcataattgtact 45572242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45576023 - 45575909
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45576023 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45575925  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45575924 aaggcataattgtact 45575909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45579690 - 45579576
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45579690 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45579592  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45579591 aaggcataattgtact 45579576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45583357 - 45583243
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45583357 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45583259  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45583258 aaggcataattgtact 45583243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45587024 - 45586910
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45587024 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45586926  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45586925 aaggcataattgtact 45586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45590691 - 45590577
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45590691 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45590593  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45590592 aaggcataattgtact 45590577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45594358 - 45594244
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45594358 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45594260  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45594259 aaggcataattgtact 45594244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45598025 - 45597911
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45598025 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45597927  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45597926 aaggcataattgtact 45597911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45601692 - 45601578
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45601692 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45601594  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45601593 aaggcataattgtact 45601578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45605359 - 45605245
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45605359 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45605261  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45605260 aaggcataattgtact 45605245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45609026 - 45608912
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45609026 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45608928  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45608927 aaggcataattgtact 45608912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45612693 - 45612579
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45612693 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45612595  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45612594 aaggcataattgtact 45612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 45616360 - 45616246
Alignment:
Q  272 gttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatcctt-aaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | |||||||| ||||| || || || ||| ||| |||||||||||| |   |||||||    
T  45616360 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtc-tttgtccgtttctacatggtttcagaag 45616262  T
Q  371 aagacaaaattgtact 386  Q
    ||| || |||||||||    
T  45616261 aaggcataattgtact 45616246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 378
Target Start/End: Complemental strand, 27765809 - 27765607
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||| || |||||||||||||| || ||||| |||| |||||||||||  ||||| | |  ||||    |||  | |||||||||||   ||||    
T  27765809 atttgagagatgttggagaagagtgtcatcgtattaagagtcgttgagaagcttcaaatcaagaacattaggtctttgtcttatatggataatgacgttg 27765710  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    | ||  ||||  ||| ||||||| |||| | |||||||| |||||||| ||| | ||||| ||||  ||| |  ||||||||||||||||||||||||||    
T  27765709 attatacattcaaaattcctttgttgaagccggaattatccgttcattctctctgtccttgaagttctttgtttgtttctacacgtggtcagaagaagac 27765610  T
Q  376 aaa 378  Q
    |||    
T  27765609 aaa 27765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 22311978 - 22311850
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| | ||||||  ||||| |||  ||   | |||||  |||||||||||||  ||||    
T  22311978 atttgagagacattggagaagagtgtcagcgcattaagagtcattcacaagcttcaaatcaaggaccttgagccattgcccgatatggataattccgttg 22311879  T
Q  276 aatagccatttgaaaatcctttgctgaaa 304  Q
     || | |||| |||||||||||| |||||    
T  22311878 gatcgtcattcgaaaatcctttgttgaaa 22311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 17417638 - 17417505
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| ||||||||||| |||||||| || |||  |||||||||||   |||| ||| |||  || ||||   |||||| |||||| ||| |    
T  17417638 atttgagagacgttggagaagagtgccagcgcataaagagttgttgagaagcttcatatcaaggacgttgaaccattg-acgatatgaataattatgtcg 17417540  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaa 310  Q
     |||| |||||||||| ||||||||||||| ||||    
T  17417539 gatagtcatttgaaaaccctttgctgaaacaggaa 17417505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 19878183 - 19878061
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttct 355  Q
    ||||||||||||| | ||||| |||  |||||||| ||||||| |  |||| ||||||| | |||||| ||||| ||||| || |  ||| || ||||||    
T  19878183 tgatatggataatgtcgttgattagatatttgaaattcctttgtttcaactagaattatccattcattatctttgtccttgaatttttttgtctgtttct 19878084  T
Q  356 acacgtggtcagaagaagacaaa 378  Q
     ||| ||||||||||| ||||||    
T  19878083 ccacatggtcagaagatgacaaa 19878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 45622088 - 45621995
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgtt-agactattgcttgatatggataatt 269  Q
    |||| |||||||| ||||||||||||| | ||||||| |||| |||||||| ||  ||||| ||||||| || | ||||| ||||||||||||||    
T  45622088 atttaagagacgttggagaagagtgtcggtgcattaagagtctttgagaagtttccaatcaaggatgttgaggc-attgcctgatatggataatt 45621995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 25564037 - 25564009
Alignment:
Q  350 gtttctacacgtggtcagaagaagacaaa 378  Q
    |||||||||||||||||||||||||||||    
T  25564037 gtttctacacgtggtcagaagaagacaaa 25564009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 17891559 - 17891370
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||  ||||| ||||||| | | ||| | ||||||||||||| ||||||    
T  17891559 atttgagagacgttggagaagagtgtcaacgcattaagagtcactgagaagcttcaaatcaaggatgttgggccattacctgatatggataatgttgttg 17891460  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtca 366  Q
    | ||| ||||||||| |||||||||| |||||||||||| | |||||| ||||| ||||| || |  ||| |  |||||||||||||||||    
T  17891459 attagacatttgaaattcctttgctg-aactggaattatccattcattatctttgtccttgaaattctttgtttgtttctacacgtggtca 17891370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 387
Target Start/End: Complemental strand, 1777275 - 1777065
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||||||||||| | |||||  |||| |||||||||||  ||||| ||| ||| | | ||||  | |||||||||||||   ||    
T  1777275 atttgagagacgttggagaagagtgtcaacacattatgagtcgttgagaagcttcaaatcaaggacgttgggccattgactaatatggataatttcaatg 1777176  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    ||| | ||||||||| ||||||||||||||||||| ||  | |||||| ||||| ||||| ||||  ||| || || | |||||||||||||||||||||    
T  1777175 aatggtcatttgaaa-tcctttgctgaaactggaagtaccccttcattctctttgtccttgaagttctttgtctgtgtttacacgtggtcagaagaagac 1777077  T
Q  376 aaaattgtactt 387  Q
    ||||||||||||    
T  1777076 aaaattgtactt 1777065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 32957500 - 32957696
Alignment:
Q  181 agagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatag 280  Q
    |||||||| ||||||||||||||||||||| | ||||  | ||||||||  |||||   ||||| |   ||||  ||||||||||||| | ||||| |||    
T  32957500 agagacgttggagaagagtgtcagcgcatttagagtcgctaagaagcttcaaatcaataatgttgggtcattgtctgatatggataatgtcgttgattag 32957599  T
Q  281 ccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
     |||| |||| |||||||||||||||||||||||  ||||||| ||||| ||||| ||||  ||| |  ||||||||| |||||||||| ||||||||    
T  32957600 acattcgaaattcctttgctgaaactggaattatctgttcattatctttgtccttgaagttctttgtttgtttctacatgtggtcagaa-aagacaaa 32957696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 10646943 - 10646817
Alignment:
Q  214 agtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaatta 313  Q
    ||||||||||||||||  ||||| ||||||| |   ||||| || |||||||||| | ||||| ||| ||||||||| |||||| ||| |||||||||||    
T  10646943 agtcattgagaagcttcaaatcaaggatgttgggtcattgcctgttatggataatgtcgttgattagacatttgaaattccttttctgtaactggaatta 10646844  T
Q  314 ttcgttcattttctttatccttaaagt 340  Q
    || ||||||| ||||| ||||| ||||    
T  10646843 tttgttcattctctttgtccttgaagt 10646817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 10983927 - 10983836
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataat 268  Q
    ||||||||||||| |||||||| ||||||||||   | ||||||||||||| |||| |||||| ||||| | |  |||| |||||||||||||    
T  10983927 atttgagagacgttggagaagaatgtcagcgcaaatagagtcattgagaaggtttg-atcatgaatgttggccctttgcctgatatggataat 10983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 378
Target Start/End: Original strand, 1782985 - 1783106
Alignment:
Q  257 gatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttcta 356  Q
    |||||||| ||| | ||||| ||| ||||||||| |||||| ||  ||| |||||||| |||||||| ||||| | ||| ||||  ||| |   ||| ||    
T  1782985 gatatggacaatgtcgttgattagacatttgaaattcctttactacaacgggaattatccgttcattctctttgttcttgaagttctttgtttattttta 1783084  T
Q  357 cacgtggtcagaagaagacaaa 378  Q
    ||||||||||||||| ||||||    
T  1783085 cacgtggtcagaagaggacaaa 1783106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 373
Target Start/End: Complemental strand, 11449588 - 11449398
Alignment:
Q  183 agacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagcc 282  Q
    |||||| |||||||||||||| | |||||| ||| ||||||||||||  ||||| ||||||| | | ||||| | ||||||||||| |  |||| ||| |    
T  11449588 agacgttggagaagagtgtcatcacattaagagtaattgagaagcttcaaatcaaggatgtttggccattgcctaatatggataatgtcattgattagac 11449489  T
Q  283 atttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaag 373  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||  ||| |  |||||||||| |||||||||||||    
T  11449488 atttgaaattcctttgttgaaactggaattatccgttcattttctttgtccttgaagttttttgtttgtttctacacatggtcagaagaag 11449398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 11545125 - 11545311
Alignment:
Q  191 gagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaa 290  Q
    ||||||||||||| | |||||| |||| |||||||||||  ||||| ||||||||| | ||| | | ||||||||||| |  |||| ||   ||||||||    
T  11545125 gagaagagtgtcatcacattaagagtcgttgagaagcttcaaatca-ggatgttaggccattacctaatatggataatgtcattgattaaaaatttgaaa 11545223  T
Q  291 atcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
     ||||||| ||||||||||||||| |||| ||| ||||| ||||| ||||  ||| |  |||||||||| ||||||||||||||||||    
T  11545224 ttcctttgttgaaactggaattatccgtttattctctttgtccttgaagttttttgtttgtttctacacatggtcagaagaagacaaa 11545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 379
Target Start/End: Original strand, 18445834 - 18446037
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||| ||||| |||||||||| |||| |||||||||||| || || |||||||   | ||  | |||||||| ||||| |||||    
T  18445834 atttgagagacgttggagaatagtgtaagcgcattaagagtcgttgagaagctttaaaccaaggatgttgagccatatcctgatatggttaattatgttg 18445933  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| ||||  ||||||||||| ||||| ||||| ||| ||||| || |  || ||||| | ||  ||| ||| |||||||||||  ||||||||||||    
T  18445934 gatagtcattcaaaaatcctttgttgaaattggaagtatccgttccttcttattgtccttcacgttctttgtccatttctacacgttttcagaagaagac 18446033  T
Q  376 aaaa 379  Q
    ||||    
T  18446034 aaaa 18446037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 19555518 - 19555373
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||||||||||| ||||| || | || |||||||||||  ||||| ||| |||   | ||||    ||||||||||||  ||||    
T  19555518 atttgagagacgttggagaagagtgtcatcgcataaagattcgttgagaagcttcaaatcaaggacgttgagccattgtcgtatatggataattccgttg 19555419  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttca 321  Q
     |||| ||||  ||||||||| |||||||| |||| ||| ||||||    
T  19555418 gatagtcattcaaaaatccttcgctgaaacaggaagtatccgttca 19555373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 17474308 - 17474156
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| | ||||||||||||||||||||| | |  |||| ||||||  ||||| ||| ||| ||   ||||  |||| ||||||| |  |||    
T  17474308 atttgagagacgttgaagaagagtgtcagcgcattaagatttgttgaaaagcttcaaatcagggacgttggatctttgccggatagggataatgtcattg 17474209  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctt 328  Q
    | |||  |||  ||| ||||||| |||||||| ||||||| ||||||||||||    
T  17474208 attagatattcaaaattcctttgttgaaactgaaattatttgttcattttctt 17474156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 21588503 - 21588468
Alignment:
Q  174 aaatttgagagacgtcggagaagagtgtcagcgcat 209  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21588503 aaatttgagagacgttggagaagagtgtcagcgcat 21588468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 22222836 - 22222781
Alignment:
Q  250 attgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaac 305  Q
    |||||| |||||||||||||  |||| |||| |||| |||||||||||||||||||    
T  22222836 attgctggatatggataattccgttggatagtcattcgaaaatcctttgctgaaac 22222781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 11419707 - 11419808
Alignment:
Q  273 ttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaa 372  Q
    |||| ||| ||||||||| |||| |  ||||| || ||||||  ||||||| ||||| ||||| ||||  ||| |  |||||||||||||||||||||||    
T  11419707 ttgattagacatttgaaattcctctattgaaattgtaattatatgttcattctctttgtccttgaagttctttgtttgtttctacacgtggtcagaagaa 11419806  T
Q  373 ga 374  Q
    ||    
T  11419807 ga 11419808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 379
Target Start/End: Original strand, 27781 - 27984
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||||||  |||||||||| || || ||||| |||| |||||||||||  ||||| ||| ||| | | ||||| |||||||||||||| |||||    
T  27781 atttgagagacgtttgagaagagtgccaacgtattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattctgttg 27880  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| ||||||||||||||||||||||| | ||| ||| |||||||| |  || ||||| |||| |||| || ||||||| || |||||||| ||||||    
T  27881 gatagtcatttgaaaatcctttgctgaaaatagaagtatccgttcattcttattgtccttgaagttatttgtctgtttctatacatggtcagatgaagac 27980  T
Q  376 aaaa 379  Q
    ||||    
T  27981 aaaa 27984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 379
Target Start/End: Complemental strand, 24492636 - 24492433
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||||||  |||||||||||||  ||||||| | || ||||||| | |  ||||| ||| ||| | | || || |||||||||||||| |||||    
T  24492636 atttgagagacgttcgagaagagtgtcattgcattaagaatcgttgagaaacatcaaatcaaggacgttgggccatcgcctgatatggataattctgttg 24492537  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| |||| |||||||||||||||||||||||| |||    ||||| | ||| ||||| ||||  ||| || ||||||||||||||| ||||||||||    
T  24492536 gatagtcattcgaaaatcctttgctgaaactggaagtatctaatcattctatttgtcctttaagttctttgtctgtttctacacgtggttagaagaagac 24492437  T
Q  376 aaaa 379  Q
    ||||    
T  24492436 aaaa 24492433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 386
Target Start/End: Complemental strand, 30608462 - 30608247
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||  |||||||||||||| |||||||| |||  |||||||| ||  ||||| ||| ||| ||| ||| | ||||||||||||||  ||||    
T  30608462 atttgagagacgatggagaagagtgtcatcgcattaagagttgttgagaagtttcaaatcaaggacgttggaccatttcctgatatggataattccgttg 30608363  T
Q  276 aatagccatttgaaaatccttt-----gctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaag 370  Q
    ||||  ||||||||| ||||||     ||| |||||  |||||| |||||||| ||||| ||| | ||||  ||| ||| |||||||| || ||||||||    
T  30608362 aatattcatttgaaattcctttgcttagcttaaactcaaattatccgttcattctctttgtccatgaagttctttgtccatttctacatgttgtcagaag 30608263  T
Q  371 aagacaaaattgtact 386  Q
    || |||||| ||||||    
T  30608262 aaaacaaaactgtact 30608247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 378
Target Start/End: Original strand, 26013622 - 26013824
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||| |||||| ||||||   |||||||| ||||| ||||||||||||||||  ||||| | ||||| | |  ||||||||||  |||| ||  ||||    
T  26013622 atttgaaagacgttggagaaatatgtcagcgtattaagagtcattgagaagcttcaaatcaagaatgttggtcctttgcttgatacagatagttccgttg 26013721  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
      ||| ||||||||| |||||||| ||||| |||||||| ||||  || ||||| ||||| ||||  ||| |  |||||||||| |||||||||||||||    
T  26013722 gctagacatttgaaattcctttgcagaaacaggaattatccgtttgttctctttttccttgaagttctttgtttgtttctacacatggtcagaagaagac 26013821  T
Q  376 aaa 378  Q
    |||    
T  26013822 aaa 26013824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 381
Target Start/End: Complemental strand, 6999125 - 6998920
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| ||||||||||| || | ||| || |||| |||||||| ||  ||||| ||| |||   | |||||  |||||| ||||||| ||||    
T  6999125 atttgagagacgttggagaagagtgccaacacataaagagtcgttgagaagtttcaaatcaaggacgttgagccattgccagatatgtataatttcgttg 6999026  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
     |||| ||||  |||||| |||||||||||  ||| |||  ||||||| |  ||  |||||| ||  ||| |  ||||||||||||||||||||||||||    
T  6999025 gatagtcattcaaaaatcatttgctgaaacatgaagtatatgttcattcttattgcccttaaggttctttatatgtttctacacgtggtcagaagaagac 6998926  T
Q  376 aaaatt 381  Q
    ||||||    
T  6998925 aaaatt 6998920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 378
Target Start/End: Original strand, 27499783 - 27499905
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttct 355  Q
    |||||||||||||  |||||  ||| || |||||| || ||| ||  ||||| |||||| |||||||| |||||||| || |||| |||| || ||||||    
T  27499783 tgatatggataatactgttggttagacaattgaaattcatttactccaactgaaattatccgttcattctctttatctttgaagttatttgtctgtttct 27499882  T
Q  356 acacgtggtcagaagaagacaaa 378  Q
    ||||||||||| |||| ||||||    
T  27499883 acacgtggtcaaaagatgacaaa 27499905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 22826123 - 22826236
Alignment:
Q  258 atatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctac 357  Q
    |||| ||||||| |||||| ||| ||||||||| |||||||| |||   |||||||| |||||||| | ||| ||||| || |  ||| |  ||||||||    
T  22826123 atattgataattctgttgattagacatttgaaattcctttgcagaa---ggaattatccgttcattctatttgtccttgaatttttttgtttgtttctac 22826219  T
Q  358 acgtggtcagaagaaga 374  Q
    |||||||||||||||||    
T  22826220 acgtggtcagaagaaga 22826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 31730449 - 31730539
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataat 268  Q
    ||||||||||||| ||||| |  |||||||||||||| |||| |||||||||||| |||||| || ||| || | |||| |||||||| ||||    
T  31730449 atttgagagacgttggagagg--tgtcagcgcattaagagtcgttgagaagcttttaatcatagaggttggaatgttgcatgatatggttaat 31730539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 37336612 - 37336721
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttct 355  Q
    ||||||||||| || |  ||| ||| ||||||||| |||||||| |||||  ||||||| |||||||| ||||| ||||| ||||  ||| |  ||||||    
T  37336612 tgatatggatagttctaatgattagacatttgaaattcctttgcagaaacatgaattatccgttcattctctttgtccttgaagttctttgtttgtttct 37336711  T
Q  356 acacgtggtc 365  Q
    ||||||||||    
T  37336712 acacgtggtc 37336721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 12859973 - 12859874
Alignment:
Q  214 agtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaatta 313  Q
    |||| |||||||||||| ||||| | |||||  | |||| ||||||||||||||| | |||||   | |||||||||||||||||||| ||||| |||||    
T  12859973 agtctttgagaagcttt-aatcaagaatgttgaaatattacttgatatggataatgtcgttgatgtgacatttgaaaatcctttgctgcaactgaaatta 12859875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 26335685 - 26335618
Alignment:
Q  256 tgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattt 324  Q
    ||||||||||||| |  ||||| || ||||||||| |||||||||| |||||||||||| |||||||||    
T  26335685 tgatatggataatgtc-ttgaaaagacatttgaaattcctttgctgcaactggaattatccgttcattt 26335618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 28760401 - 28760457
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttga 232  Q
    ||||||||||||| |||||||||||||| ||||   | |||||||||||||||||||    
T  28760401 atttgagagacgttggagaagagtgtcatcgcaaatagagtcattgagaagctttga 28760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 386
Target Start/End: Complemental strand, 27486161 - 27485950
Alignment:
Q  175 aatttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgtt 274  Q
    |||||||||||||| | ||||||||| ||| | ||||| | ||||||||||||||  ||||| ||| |||   | ||||  ||||||| ||||||  |||    
T  27486161 aatttgagagacgttgaagaagagtgccagtgtattaagaatcattgagaagcttcaaatcaaggaagttgagccattgtctgatatgtataattcagtt 27486062  T
Q  275 gaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
      |||| ||||  ||||||||||||||||||||||| ||  | |||||| |  || ||||| ||||  ||| || |||||||||||||||||||||||||    
T  27486061 agatagtcattaaaaaatcctttgctgaaactggaagtaaccattcattcttattgtccttgaagttctttgtctgtttctacacgtggtcagaagaaga 27485962  T
Q  375 caaaattgtact 386  Q
    ||||||||||||    
T  27485961 caaaattgtact 27485950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 378
Target Start/End: Complemental strand, 13291893 - 13291691
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||| |||||||||||||| |||||||| | || |||||||| ||  ||||| |||  || | | ||| | |||||||||||||    |||    
T  13291893 atttgagagacgttggagaagagtgtcaacgcattaagaatcgttgagaagtttcaaatcaaggacattgggccatttcctgatatggataatgcaattg 13291794  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagac 375  Q
    | ||| ||||||||| | ||||| |||||||| |||||| |||||||| | ||| |||||  |||  ||| |  ||||||||||||||||||||||||||    
T  13291793 attagacatttgaaatttctttgttgaaactgaaattatccgttcattctttttgtccttggagttctttgtttgtttctacacgtggtcagaagaagac 13291694  T
Q  376 aaa 378  Q
    |||    
T  13291693 aaa 13291691  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 340
Target Start/End: Complemental strand, 19307138 - 19306974
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    ||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||  |||||  |||||| | | ||| | |||||||||||||  |||||    
T  19307138 atttgagagacgctggagaagagtgtcagtgcattaagagtcattgagaagcttcaaatcaaagatgttgggccatttcctgatatggataatggtgttg 19307039  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagt 340  Q
    | ||  | ||  ||| ||||||||| ||| |||||||||| ||||||||| ||| ||||| ||||    
T  19307038 attatacgttcaaaattcctttgctcaaattggaattattagttcattttttttgtccttgaagt 19306974  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 378
Target Start/End: Original strand, 10928864 - 10929059
Alignment:
Q  183 agacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagcc 282  Q
    |||||| ||||||||||| || | |||||| |||| |||||||||||  ||||| ||||| |||    |||| |||||||||||||    |||| ||| |    
T  10928864 agacgttggagaagagtgccaacacattaagagtcgttgagaagcttgaaatcaaggatgataggtctttgcctgatatggataatgccattgattagac 10928963  T
Q  283 atttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
    |||  ||| ||| ||||||||||||||||||| | |||||| ||||||||||| ||||   || |  |||||||||| ||||||||||| ||||||    
T  10928964 attcaaaattccattgctgaaactggaattatccattcattctctttatccttgaagttccttgtttgtttctacacatggtcagaagaggacaaa 10929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 17119027 - 17119120
Alignment:
Q  285 ttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
    |||||| |||||||| ||||||||||||||  ||||||| ||||| ||||| ||||  ||| |  ||||||| ||||| |||||||||||||||    
T  17119027 ttgaaattcctttgcggaaactggaattatcagttcattctctttgtccttgaagttctttgtttgtttctatacgtgatcagaagaagacaaa 17119120  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 17637590 - 17637545
Alignment:
Q  292 tcctttgctgaaactggaattattcgttcattttctttatccttaa 337  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||||||    
T  17637590 tcctttgctgaaattggaattattcattcattctctttgtccttaa 17637545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 46348977 - 46349018
Alignment:
Q  282 catttgaaaatcctttgctgaaactggaattattcgttcatt 323  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  46348977 catttgaaaatcctttgttgaaactggaagtatacgttcatt 46349018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 15331447 - 15331383
Alignment:
Q  251 ttgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattatt 315  Q
    |||| ||||||||||||||  ||||||||| | ||| ||  ||||||||||||| ||||||||||    
T  15331447 ttgcctgatatggataattccgttgaatagtcctttaaatttcctttgctgaaagtggaattatt 15331383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 374
Target Start/End: Complemental strand, 24277390 - 24277194
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttg 275  Q
    |||||||||||||  |||||||||| || |  ||||| ||||||||| | ||||| ||| | ||||||| | | ||||| ||||||||||| | | ||||    
T  24277390 atttgagagacgtttgagaagagtgccaacaaattaagagtcattgaaatgctttaaataaaggatgttgggc-attgcctgatatggata-tgtcgttg 24277293  T
Q  276 aatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
    | | | ||||||||| ||||||  |||||||| |||||| |||||||| ||||| ||||| |||| |||| |  | ||||||||||||| |||||||||    
T  24277292 atttgacatttgaaattcctttattgaaactgaaattatccgttcattctctttgtccttgaagttatttgtttgcttctacacgtggttagaagaaga 24277194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 378
Target Start/End: Complemental strand, 23521157 - 23520977
Alignment:
Q  198 gtgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatccttt 297  Q
    ||||||||||||||| |||| ||| |||| ||  ||||| | ||||| | | ||| | ||||||| ||||| | ||||| ||| ||||||||| | ||||    
T  23521157 gtgtcagcgcattaagagtcgttgggaagtttcaaatcaagaatgttgggccattacctgatatgaataatgtcgttgattagacatttgaaattacttt 23521058  T
Q  298 gctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaagacaaa 378  Q
    |||| |||  ||||||| | |||||| ||||| ||||| ||||  ||| || |||| |||||||||||| |||| ||||||    
T  23521057 gctgcaacatgaattatccattcattctctttgtccttgaagttttttgtctgtttttacacgtggtcaaaagatgacaaa 23520977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 28890221 - 28890393
Alignment:
Q  206 gcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgttgaatagccatttgaaaatcctttgctgaaac 305  Q
    ||||||| |||| |||||||||||  ||||| ||||||| |  | |||| ||||||||||||| | ||||| ||| |||| |||| ||||||||| |||     
T  28890221 gcattaagagtcgttgagaagcttcaaatcaaggatgttggttttttgcctgatatggataatgtcgttgattagacattcgaaattcctttgctaaaat 28890320  T
Q  306 tggaattattcgttcattttctttatccttaaagt--catttttccgtttctacacgtggtcagaagaagacaaa 378  Q
    ||||||| |  ||||||| ||||| | ||| ||||  ||| |||  |||||||||| ||||||||||| ||||||    
T  28890321 tggaattttctgttcattctctttgttcttgaagttccatgttt--gtttctacacatggtcagaagaggacaaa 28890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 23585033 - 23584916
Alignment:
Q  261 tggataattttgttgaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacg 360  Q
    |||||||||||||||| | | ||||||||| | ||||| ||||||| |||  || |||||||| ||||| ||||| ||||  ||| |  |||| ||||||    
T  23585033 tggataattttgttgattggacatttgaaatttctttgttgaaactagaacaatccgttcattctctttgtccttgaagttctttgtttgtttatacacg 23584934  T
Q  361 tggtcagaagaagacaaa 378  Q
    ||||||||| ||||||||    
T  23584933 tggtcagaataagacaaa 23584916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 5826211 - 5826267
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttga 232  Q
    ||||||||||||| |||||| ||||||||||||   |||||| ||||||||||||||    
T  5826211 atttgagagacgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagctttga 5826267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 5828810 - 5828866
Alignment:
Q  176 atttgagagacgtcggagaagagtgtcagcgcattaaaagtcattgagaagctttga 232  Q
    ||||||||||||| |||||| ||||||||||||   |||||| ||||||||||||||    
T  5828810 atttgagagacgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagctttga 5828866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 378
Target Start/End: Original strand, 5789 - 5992
Alignment:
Q  176 atttgagagacgtcggagaagag-tgtcagcgcattaaaagtcattgagaagctttgaatcatggatgttagactattgcttgatatggataattttgtt 274  Q
    ||||||||||||| |||||| |  || || |||||||| ||||||| ||||||||  ||||| | | ||||  |  |||| | ||||| ||| || ||||    
T  5789 atttgagagacgttggagaacaaatgccaacgcattaagagtcatttagaagcttcaaatcaagaacgttatccctttgcctaatatgaatagttctgtt 5888  T
Q  275 gaatagccatttgaaaatcctttgctgaaactggaattattcgttcattttctttatccttaaagtcatttttccgtttctacacgtggtcagaagaaga 374  Q
    || ||| ||||||||| ||||||||||||||| |||||||   |||||| ||||| ||| | ||||  ||| |  |||| ||||||| ||||||||||||    
T  5889 gattagacatttgaaattcctttgctgaaacttgaattatctattcattctctttgtccctgaagttctttctttgtttttacacgttgtcagaagaaga 5988  T
Q  375 caaa 378  Q
    ||||    
T  5989 caaa 5992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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