View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_81 (Length: 400)
Name: NF1498_high_81
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 3425315 - 3425683
Alignment:
| Q |
19 |
gtgatttgatgtctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgac |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425315 |
gtgatttgatatctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgac |
3425414 |
T |
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| Q |
119 |
catgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425415 |
catgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtat |
3425514 |
T |
|
| Q |
219 |
agcgtatctacaatagctatcatacacactcttgtgccctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425515 |
agcgtatctacaatagctatcatacacactcttgtgtcctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatcct |
3425614 |
T |
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| Q |
319 |
tgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttctggttc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3425615 |
tgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttttggttc |
3425683 |
T |
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