View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_82 (Length: 399)
Name: NF1498_high_82
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_82 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 383
Target Start/End: Original strand, 25986 - 26364
Alignment:
| Q |
4 |
aaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacnnnnnnngtactaatatttgaatataata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25986 |
aaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacaaaaaaagtactaatatttgaatataata |
26085 |
T |
|
| Q |
104 |
aaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaattgcatatttaaatttcaacactttat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26086 |
aaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaattgcatatttaaatttcaacactttat |
26185 |
T |
|
| Q |
204 |
tctttttactaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattatatcaattcaaacatgcattaagaaaaataattttaga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26186 |
tctttttactaagtgtatgttggaatgaataaggagttagtttggtaaaatcaccataattatatcaattcaaacatgcattaagaaaaataattttag- |
26284 |
T |
|
| Q |
304 |
aagtgagtattataagttaagagtatatacccggatattgtttggaatgtgaaaatattccaatgaattttcattaattc |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26285 |
aagtgagtattataagttaagagtatttacccggatattgtttggaatgtgaaaatattccaatgaattttcattaattc |
26364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 365
Target Start/End: Complemental strand, 17580 - 17366
Alignment:
| Q |
170 |
atgtaaattgcatatttaa-atttcaacactttattctttttactaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattatat |
268 |
Q |
| |
|
||||||||||||||||||| || || ||||||| ||||||| ||||||||||||| |||||||| | || | ||||| ||||||||||||||||| | |
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|
| T |
17580 |
atgtaaattgcatatttaagataagaagactttat-ctttttattaagtgtatgttgaaatgaataggtagttcatttggaaaaatcaccataattatgt |
17482 |
T |
|
| Q |
269 |
caattcaa------------acatgcattaagaaaaataattttagaaagtgagta----ttataagttaagagtatatacccggatattgtttgga--- |
349 |
Q |
| |
|
|||||| | |||| |||| |||||||||||||||||||||||| | ||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
17481 |
caattctatcatcaatttcaacatacattgagaaaaataattttagaaagtgagaatcatttataagttaagagtatttactcagatattgtttggaggg |
17382 |
T |
|
| Q |
350 |
atgtgaaaatattcca |
365 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
17381 |
atgtgaaaatcttcca |
17366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 20324196 - 20323805
Alignment:
| Q |
3 |
taaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacnnnnnnngtactaatatttgaatataat |
102 |
Q |
| |
|
|||||||||||| ||| ||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
20324196 |
taaattttaagt-gggatacaagtcacataataaaattatagatagtcaaaatttagtaaaatatatttgataggaaaagtactgatatttgaatataa- |
20324099 |
T |
|
| Q |
103 |
aaaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaattgcatattt-aaatttcaacacttt |
201 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| |||||||| |||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20324098 |
aaaattggacatcattttggtgaaattatccctacaacaaccaatgcaaatccatccttagttattcatgtaaattgcatatttaaaatttcaacacttt |
20323999 |
T |
|
| Q |
202 |
attctttttactaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattat------------atcaattcaaacatgcattaaga |
289 |
Q |
| |
|
| | |||||||||||||||||||| |||||||| |||| | |||||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
20323998 |
aatatttttactaagtgtatgttgaaatgaatagggagtgaatttggtaaaatcgccataattatgtcaattctatcatcaattcaaacatgcattaaga |
20323899 |
T |
|
| Q |
290 |
aaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttggaatgtgaaaatattccaatgaattttcattaattc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
20323898 |
aaaataattttagaaagtgagtattataagttaagagtatttatccggatattgtttggaatgtgaaaatattcaaatgaattttctttaattc |
20323805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 20299349 - 20298956
Alignment:
| Q |
1 |
tataaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacnnnnnnngtactaatatttgaatata |
100 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
20299349 |
tataaattttaagt-gggatacaagtcacataataaaattatagatagtcaaaatttagtaaaatatatttgataggaaaagtactgatatttgaatata |
20299251 |
T |
|
| Q |
101 |
ataaaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaattgcatatttaaatt-tcaacact |
199 |
Q |
| |
|
| ||||||| ||||| ||||||| | | ||| |||||||| |||||||||| | |||||||| |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
20299250 |
a-aaaattgtacatcattttggtgatattatccctacaacaaccaatgcaaatccatccttagttattcatgtaaattgcatatttaaaatatcaacact |
20299152 |
T |
|
| Q |
200 |
ttattctttttactaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattat------------atcaattcaaacatgcattaa |
287 |
Q |
| |
|
||| | | |||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20299151 |
ttaatatatttactaagtgtgtgttggaatgaatagggagtgaatttggtaaaatcaccataattatgtcaattctatcatcaattcaaacatgcattaa |
20299052 |
T |
|
| Q |
288 |
gaaaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttggaatgtgaaaatattccaatgaattttcattaattc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
20299051 |
gaaaaataattttagaaagtgagtattataagttaagagtatttacccggatattgtttggaatgtgaaaatattcaaatgaattttctttaattc |
20298956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 20300983 - 20301377
Alignment:
| Q |
1 |
tataaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacnnnnnnngtactaatatttgaatata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
20300983 |
tataaattttaagttgggctacagctcacataataaaattataaatagtcaaaatttagtaaaatatatttgaaagaaaaagtaaagatatttcaatata |
20301082 |
T |
|
| Q |
101 |
ataaaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaattgcatatttaaa-tttcaacact |
199 |
Q |
| |
|
| ||||||||||||| ||||||| ||| ||| |||||||| |||||||||||| |||||||| |||||| |||| |||||||||||||| |||||| ||| |
|
|
| T |
20301083 |
a-aaaattggacatcattttggtgaaattatccctacaac-accaatgcaagtccatccttagttattcgtgtatattgcatatttaaaatttcaatact |
20301180 |
T |
|
| Q |
200 |
ttattcttttt-actaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattat------------atcaattcaaacatgcatta |
286 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||| | || |||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20301181 |
ttaatcttttttaccaagtgtatgttggaatgaataggaagtgagtttggtgaaatcaccataattatgtcaattctatcatcaattcaaacatgcatta |
20301280 |
T |
|
| Q |
287 |
agaaaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttggaatgtgaaaatattccaatgaattttcattaattc |
383 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
20301281 |
agaaaaataattttagaaaatgagtattataagttaagagtatttatccggatattgttcggaatgtgaaaatattccaaagaatcttcattaattc |
20301377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 20325513 - 20325913
Alignment:
| Q |
1 |
tataaattttaagttgggctacaactcacatcaaaaaattatagatagtgaaaatttagtaaaatatatttgacnnnnnnngtactaatatttgaatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
20325513 |
tataaattttaagttgggctacaactcacataataaaattgtagatagtcaaaatttagtaaaatatatttgaaagaaaaagtaaagatatttgaatata |
20325612 |
T |
|
| Q |
101 |
ataaaattggacatctttttggtaaaaatatgcctacaacgaccaatgcaagtacatccttaattattcatgtaaat-------tgcatatttaaa-ttt |
192 |
Q |
| |
|
| ||| ||||||||| ||||||| ||| ||| |||||||| |||||||||||| |||||||| ||||||||||| || |||||||||||| ||| |
|
|
| T |
20325613 |
a-aaatttggacatcattttggtgaaattatccctacaac-accaatgcaagtccatccttagttattcatgtatataatatattgcatatttaaaattt |
20325710 |
T |
|
| Q |
193 |
caacactttattctttttactaagtgtatgttggaatgaataaggagctagtttggtaaaatcaccataattat------------atcaattcaaacat |
280 |
Q |
| |
|
||| |||||| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
20325711 |
caatactttaatctttttaccaagtgtatgttggaatgaatagggagtgagtttggtgaaatcaccataattatgtcaattctatcatcaattcaaacat |
20325810 |
T |
|
| Q |
281 |
gcattaagaaaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttggaatgtgaaaatattccaatgaattttcattaa |
380 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
20325811 |
acattaagaaaaataattttagaaaatgagtattataagttaagagtatttatccggatattgttcggaacgtgaaaatattccaaagaattttcattaa |
20325910 |
T |
|
| Q |
381 |
ttc |
383 |
Q |
| |
|
||| |
|
|
| T |
20325911 |
ttc |
20325913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 35914923 - 35914813
Alignment:
| Q |
273 |
tcaaacatgcattaagaaaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttgga--atgtgaaaatattccaatgaa |
370 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||| ||| | ||||| |||||| |||| ||||| |||||||||| |
|
|
| T |
35914923 |
tcaaacatgcactaagaaaaataattttaaaaagtgataattataagttacgagtatttacttgtatattatttggaggatgttaaaatcttccaatgaa |
35914824 |
T |
|
| Q |
371 |
ttttcattaat |
381 |
Q |
| |
|
||||| ||||| |
|
|
| T |
35914823 |
ttttctttaat |
35914813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 35915007 - 35915061
Alignment:
| Q |
290 |
aaaataattttagaaagtgagtattataagttaagagtatatacccggatattgt |
344 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||| |
|
|
| T |
35915007 |
aaaataattttagaaagtgagtactataagttacgagtatttacttggatattgt |
35915061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 35568856 - 35568960
Alignment:
| Q |
274 |
caaacatgcattaagaaaaataattttagaaagtgagtattataagttaagagtatatacccggatattgtttgga---atgtgaaaatattccaatgaa |
370 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||| ||| |||||||||||| ||||| ||| | ||||| |||||| |||| ||||| |||||| ||| |
|
|
| T |
35568856 |
caaaaatgcactaagaaaaataattttaaaaaatgactattataagttacaagtatttacttgaatattatttggagggatgttaaaatcttccaacgaa |
35568955 |
T |
|
| Q |
371 |
ttttc |
375 |
Q |
| |
|
||||| |
|
|
| T |
35568956 |
ttttc |
35568960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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