View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_86 (Length: 389)
Name: NF1498_high_86
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_86 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 41866333 - 41866689
Alignment:
| Q |
17 |
aatatcttcaatccaaacataatccggatttgaaagagcaaattttgctagataatgtgccgcatgattagccatacgtctaatatgcactaaatcataa |
116 |
Q |
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| T |
41866333 |
aatatcttcaatccaaacataatccggatttgaaagagcaaattttgctagataatgtgccgcatgattagccatacgtctaatacgcactaaatcataa |
41866432 |
T |
|
| Q |
117 |
ctacggaaagtcgaaaataacaatttacagtcatccataatgggacctatgtaatattgaccatggtgttggtc------agttgtgatagtgttgaggg |
210 |
Q |
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| T |
41866433 |
ctacggaaagtcgaaaataacaatttacagtcatccagaatgggacctatgtaagattgaccatggtgttggtccctaagagttgtgatagtgttgaggg |
41866532 |
T |
|
| Q |
211 |
agtctgattcagctattatgttttaagaaaagcatatctcttgcaaactctaagccaagtttcaaagtcatagcctctgctatgtctgaatccggcaaaa |
310 |
Q |
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| T |
41866533 |
agtctgattcagctattatgttttaagaaaagcatatctcttgcaaactctaagccaagtttcaaagccatagcctctgctatgtctgaatccggcaaaa |
41866632 |
T |
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| Q |
311 |
ccaatttcttacagcatgaaaggatgggaatgatctattcccaacggttatcacaag |
367 |
Q |
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| T |
41866633 |
ccaatttcttacagcatgaaaggatgggaatgatctattcccaacggttatcacaag |
41866689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 326
Target Start/End: Original strand, 20203951 - 20204250
Alignment:
| Q |
26 |
aatccaaacataatccggatttgaaagagcaaattttgctagataatgtgccgcatgattagccatacgtctaatatgcactaaatcataactacggaaa |
125 |
Q |
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| T |
20203951 |
aatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgattagccacacgtctaacgtgcactaaatcgtaactatggaaa |
20204050 |
T |
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| Q |
126 |
gtcgaaaataacaatttacagtcatccataatgggacctatgtaatattgaccatggtgttggtc------agttgtgatagtgttgagggagtctgatt |
219 |
Q |
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| T |
20204051 |
gatgaaaataacaatttaccgtcatccaaaatgagacctatgtaagattgaccatggtgctggtccctaagagctgtgatagtgttgagagag------t |
20204144 |
T |
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| Q |
220 |
cagctattatgttttaagaaaagcatatctcttgcaaactctaagccaagtttcaaagtcatagcctctgctatgtctgaatccggcaaaaccaatttct |
319 |
Q |
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| T |
20204145 |
caggtctta-ggtttaagaaaagcatatcccttgcaaacttcaagccaagtttcaatgtcatagtctctgctatgtctgaatccggtaaaaccaatctct |
20204243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 326
Target Start/End: Original strand, 22097974 - 22098273
Alignment:
| Q |
26 |
aatccaaacataatccggatttgaaagagcaaattttgctagataatgtgccgcatgattagccatacgtctaatatgcactaaatcataactacggaaa |
125 |
Q |
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|||||||||| |||| |||||||||| |||||||||||| ||||| ||| | || |||||||||| |||||||| ||||||||||| |||||| ||||| |
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| T |
22097974 |
aatccaaacacaatctggatttgaaatagcaaattttgcaagatagtgtactgcttgattagccacacgtctaacgtgcactaaatcgtaactatggaaa |
22098073 |
T |
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| Q |
126 |
gtcgaaaataacaatttacagtcatccataatgggacctatgtaatattgaccatggtgttggtc------agttgtgatagtgttgagggagtctgatt |
219 |
Q |
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| T |
22098074 |
gatgaaaataacaatttaccgtcatccaaaatgagacctatgtaagattgaccatggtgctggtccctaagagctgtgatagtgttgagagag------t |
22098167 |
T |
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| Q |
220 |
cagctattatgttttaagaaaagcatatctcttgcaaactctaagccaagtttcaaagtcatagcctctgctatgtctgaatccggcaaaaccaatttct |
319 |
Q |
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| T |
22098168 |
caggtctta-ggtttaagaaaagcatatcccttgcaaacttcaagccaagtttcaatgtcatagtctctgctatgtctgaatccggtaaaaccaatctct |
22098266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 11219325 - 11219275
Alignment:
| Q |
20 |
atcttcaatccaaacataatccggatttgaaagagcaaattttgctagata |
70 |
Q |
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|||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
11219325 |
atcttcaatccaaacacaatccagatttgaaagagaaaattttgctagata |
11219275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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