View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_89 (Length: 388)
Name: NF1498_high_89
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_89 |
 | |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0400 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 12437 - 12099
Alignment:
| Q |
18 |
gctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12437 |
gctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggc |
12338 |
T |
|
| Q |
118 |
cataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
12337 |
cataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaac |
12238 |
T |
|
| Q |
218 |
tctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcggtgaaccaatataaatttccaccaacacaaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
12237 |
tctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcagtgaaccaatataactttccactaacacaaatg |
12138 |
T |
|
| Q |
318 |
ttgtgtggtaattgacctgtgaaattattatcatctaac |
356 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12137 |
ttgtgcggtaattgacctgtgaaattattatcacctaac |
12099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 6096 - 5979
Alignment:
| Q |
71 |
aaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
170 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| || |||||| ||||| |||||| |
|
|
| T |
6096 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
5997 |
T |
|
| Q |
171 |
aaaacatctgttatattt |
188 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
5996 |
aagctatctgttatattt |
5979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 5867 - 5819
Alignment:
| Q |
300 |
tttccaccaacacaaatgttgtgtggtaattgacctgtgaaattattat |
348 |
Q |
| |
|
||||||| |||||| || ||||| ||||| ||||||||||||||||||| |
|
|
| T |
5867 |
tttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
5819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 13080 - 12742
Alignment:
| Q |
18 |
gctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13080 |
gctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggc |
12981 |
T |
|
| Q |
118 |
cataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
12980 |
cataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaac |
12881 |
T |
|
| Q |
218 |
tctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcggtgaaccaatataaatttccaccaacacaaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
12880 |
tctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcagtgaaccaatataactttccactaacacaaatg |
12781 |
T |
|
| Q |
318 |
ttgtgtggtaattgacctgtgaaattattatcatctaac |
356 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12780 |
ttgtgcggtaattgacctgtgaaattattatcacctaac |
12742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 6740 - 6623
Alignment:
| Q |
71 |
aaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
170 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| || |||||| ||||| |||||| |
|
|
| T |
6740 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
6641 |
T |
|
| Q |
171 |
aaaacatctgttatattt |
188 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
6640 |
aagctatctgttatattt |
6623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 6511 - 6463
Alignment:
| Q |
300 |
tttccaccaacacaaatgttgtgtggtaattgacctgtgaaattattat |
348 |
Q |
| |
|
||||||| |||||| || ||||| ||||| ||||||||||||||||||| |
|
|
| T |
6511 |
tttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
6463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 14533199 - 14533528
Alignment:
| Q |
18 |
gctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14533199 |
gctccacctagttcttgaggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggc |
14533298 |
T |
|
| Q |
118 |
cataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaac |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||||| || ||||| |||| |||||||| | |||| |||| |||| || || |
|
|
| T |
14533299 |
cataaaaattattatcactcaattccatgtagtccaaatttggatacacgccaaaggcatcagttatattgtcagttatttgattttgttgaagtcttac |
14533398 |
T |
|
| Q |
218 |
tctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcggtgaaccaatataaatttccaccaacacaaatg |
317 |
Q |
| |
|
||| ||||| |||||||| |||||||||||| |||||| | |||||||| || |||||| |||| |||| | ||| |||| |||| |||||||| |
|
|
| T |
14533399 |
tctgataagactggagcacttcttcaaactctttggaattgggcctgtgaattggttattgctggcggagaacttagttaactttctaccagcacaaatg |
14533498 |
T |
|
| Q |
318 |
ttgtgtggtaattgacctgtgaaattatta |
347 |
Q |
| |
|
||| | ||||| |||||||||||||||||| |
|
|
| T |
14533499 |
ttgagaggtaaatgacctgtgaaattatta |
14533528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 49 - 255
Target Start/End: Complemental strand, 14503609 - 14503403
Alignment:
| Q |
49 |
ttaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgta |
148 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
14503609 |
ttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaattattttcactcaattccatgta |
14503510 |
T |
|
| Q |
149 |
gaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactc |
248 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14503509 |
gtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattctttaaactc |
14503410 |
T |
|
| Q |
249 |
attggaa |
255 |
Q |
| |
|
|||||| |
|
|
| T |
14503409 |
tttggaa |
14503403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 14467455 - 14467130
Alignment:
| Q |
24 |
cctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaa |
123 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| || ||| |||||| ||||| |||||||||| |||| || |||||||| ||||||| ||||||||| | |
|
|
| T |
14467455 |
cctagttctggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgatagatggccataca |
14467356 |
T |
|
| Q |
124 |
aattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaat |
223 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | ||||| || ||||| |||| |||||||| | |||| |||| ||||||| |||||| |
|
|
| T |
14467355 |
aattattatcactcaattccatgtagtccaattttggatgcacgccaaaggcatcagttatattgtcagttagttgattttgttgaagccttactctata |
14467256 |
T |
|
| Q |
224 |
aaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattggatgcggtgaaccaatataaatttccaccaacacaaatgttgtgt |
323 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||| | |||||||| || |||||| |||| ||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
14467255 |
aaggctagagcagttcttcaaactctttggaattgggcctgtgaattggttattgctggcggagaaccaagttaactttccaccagcacatatgttgtga |
14467156 |
T |
|
| Q |
324 |
ggtaattgacctgtgaaattattatc |
349 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
14467155 |
ggtaaatgacctgtgaaattattatc |
14467130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 190
Target Start/End: Original strand, 14523096 - 14523250
Alignment:
| Q |
36 |
ggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcac |
135 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||| || | || ||||||||||||||||||| |
|
|
| T |
14523096 |
ggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaatttggagaaagataaccataaaaattattatcac |
14523195 |
T |
|
| Q |
136 |
ttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc |
190 |
Q |
| |
|
||||||| |||||| |||||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
14523196 |
ttaattctatgtagtccaaatttggatacacaccaaaactatctgttatatttcc |
14523250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 15016767 - 15016523
Alignment:
| Q |
24 |
cctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaa |
123 |
Q |
| |
|
||||||||| | ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || || || ||||| | |
|
|
| T |
15016767 |
cctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaatttgaccataca |
15016668 |
T |
|
| Q |
124 |
aattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaat |
223 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | |||||| ||||||||| || |||||||||||| || | ||| |||||| | ||| | |
|
|
| T |
15016667 |
aattattatcactcaattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctctt |
15016568 |
T |
|
| Q |
224 |
aaggctggagcaattcttcaaactcattggaactaatcctgtgaa |
268 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15016567 |
aaggcttgagcaattcttcaaactctctggaactaggcctgtgaa |
15016523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 15001759 - 15001515
Alignment:
| Q |
24 |
cctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaa |
123 |
Q |
| |
|
||||||||| | ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | ||| ||||||| |
|
|
| T |
15001759 |
cctagttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaa |
15001660 |
T |
|
| Q |
124 |
aattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaat |
223 |
Q |
| |
|
||||||||||||| || |||||||| |||||| |||||| |||||||| |||||||||||||| || | ||| |||| || ||||| | |
|
|
| T |
15001659 |
aattattatcactcaaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgt |
15001560 |
T |
|
| Q |
224 |
aaggctggagcaattcttcaaactcattggaactaatcctgtgaa |
268 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15001559 |
aaggcttgagcaattcttcaaactctctggaactaggcctgtgaa |
15001515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 14481826 - 14481713
Alignment:
| Q |
267 |
aaatgattattggatgcggtgaaccaatataaatttccaccaacacaaatgttgtgtggtaattgacctgtgaaattattatcatctaactccaactttc |
366 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14481826 |
aaatgattattggatgcggtgaaccaagttaactctccactaacacaaatgttgagtggtaattgacctgtgaaattattatcatctaactccaatattc |
14481727 |
T |
|
| Q |
367 |
taaaattggtaagc |
380 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14481726 |
taaaattggtaagc |
14481713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 15036672 - 15036506
Alignment:
| Q |
24 |
cctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaa |
123 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || | ||| ||||||| |
|
|
| T |
15036672 |
cctagttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaa |
15036573 |
T |
|
| Q |
124 |
aattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc |
190 |
Q |
| |
|
||||||||||||| || ||||||||| |||| | |||||| ||||||||| |||||||||||||| |
|
|
| T |
15036572 |
aattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttcc |
15036506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 15010652 - 15010408
Alignment:
| Q |
24 |
cctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaa |
123 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| ||||||| |||||||||||| |||||||||| ||||||||||| || | ||| ||||||| |
|
|
| T |
15010652 |
cctagttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaa |
15010553 |
T |
|
| Q |
124 |
aattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaat |
223 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | |||||| ||||||||| |||||||||||||| || | ||| |||||| | ||| | |
|
|
| T |
15010552 |
aattattatcactcaattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgt |
15010453 |
T |
|
| Q |
224 |
aaggctggagcaattcttcaaactcattggaactaatcctgtgaa |
268 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15010452 |
aaggcttgagcaattcttcaaactctctggaactaggcctgtgaa |
15010408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 15024730 - 15024525
Alignment:
| Q |
63 |
gagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggat |
162 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || ||||||||| ||| | ||||| |
|
|
| T |
15024730 |
gagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggat |
15024631 |
T |
|
| Q |
163 |
aaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcc |
262 |
Q |
| |
|
| ||||||||| || |||||||||||| || | ||| |||||| ||||| ||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
15024630 |
acacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagcc |
15024531 |
T |
|
| Q |
263 |
tgtgaa |
268 |
Q |
| |
|
||||| |
|
|
| T |
15024530 |
agtgaa |
15024525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 15032071 - 15031866
Alignment:
| Q |
63 |
gagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggat |
162 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || ||||||||| ||| | ||||| |
|
|
| T |
15032071 |
gagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggat |
15031972 |
T |
|
| Q |
163 |
aaacaccaaaaacatctgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcc |
262 |
Q |
| |
|
| ||||||||| || |||||||||||| || | ||| |||||| ||||| ||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
15031971 |
acacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagcc |
15031872 |
T |
|
| Q |
263 |
tgtgaa |
268 |
Q |
| |
|
||||| |
|
|
| T |
15031871 |
agtgaa |
15031866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 15040383 - 15040242
Alignment:
| Q |
49 |
ttaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgta |
148 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| || |||||||| ||||| ||||||||| || | |||||| |||| ||||||||||| |
|
|
| T |
15040383 |
ttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatatttattaccactcaattccatgta |
15040284 |
T |
|
| Q |
149 |
gaccaaatgtggataaacaccaaaaacatctgttatatttcc |
190 |
Q |
| |
|
| ||| | |||| | |||||||| ||||||||||||||| |
|
|
| T |
15040283 |
gtacaagtttggacacacaccaaagctatctgttatatttcc |
15040242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 14503357 - 14503308
Alignment:
| Q |
301 |
ttccaccaacacaaatgttgtgtggtaattgacctgtgaaattattatca |
350 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
14503357 |
ttccaccaacacaaatgttgtgaggtaaatggcctatgaaattattatca |
14503308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 18761 - 18809
Alignment:
| Q |
209 |
aagcctaactctaataaggctggagcaattcttcaaactcattggaact |
257 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
18761 |
aagcctaagtctaataaggctagagcaattcttcaaactttttggaact |
18809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 15665893 - 15665941
Alignment:
| Q |
209 |
aagcctaactctaataaggctggagcaattcttcaaactcattggaact |
257 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
15665893 |
aagcctaagtctaataaggctagagcaattcttcaaactttttggaact |
15665941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 14605355 - 14605297
Alignment:
| Q |
219 |
ctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattatt |
277 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||||| | |||||||| || ||||| |
|
|
| T |
14605355 |
ctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggttatt |
14605297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 17848111 - 17848017
Alignment:
| Q |
96 |
ccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc |
190 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| | ||| || | |||||| |||||| ||||| |||||||| | ||||||||||||||| |
|
|
| T |
17848111 |
ccccagttcggtgaaatctggccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttcc |
17848017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 16024640 - 16024567
Alignment:
| Q |
117 |
ccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc |
190 |
Q |
| |
|
||||||||||| || | |||||||| |||||| ||||||| |||||| |||||||| | || ||||||||||| |
|
|
| T |
16024640 |
ccataaaaattgttttgacttaattgcatgtaaaccaaatctggatatacaccaaagtcttcggttatatttcc |
16024567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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