View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_90 (Length: 388)
Name: NF1498_high_90
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_90 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 30543865 - 30543480
Alignment:
| Q |
7 |
agatatttctctattcacatataatgatgtattatgttaatctaaaagtttttagaggagatgacacgagtttcttttagtttaaccaatgttttaagtt |
106 |
Q |
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| T |
30543865 |
agatatttctctattcacatataatgatgtattatgttcatcgagaaatgtttagaaaagatgacacgagttttttttagtttaaccaatattttgagtt |
30543766 |
T |
|
| Q |
107 |
tgaattcgagtttggatacgcaacaacattaaaactcttaaaatagtttgtcgtctatttgagctccacaaaatttgatggattaatttccgcaattatg |
206 |
Q |
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| T |
30543765 |
tgaattcgagtttggatatgcaacaacattaaaactcctaaaagagtttgccgtctatttgagctccacaagatttgaaggattaacttccacaattatg |
30543666 |
T |
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| Q |
207 |
tgcataagatattaggttaaaaataaaatactatgtttgactttatattgaagtaaaaatgt-----------gtacatattactaagggaaaaaactcc |
295 |
Q |
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| T |
30543665 |
tgcataggatattaggttaaaaataaaatactatgtttgactttatattgaagtaaaaatgtgcatgcaattagtacatattgctaagggaaaaaactcc |
30543566 |
T |
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| Q |
296 |
catgtgattgtttcattttgaggtgggttcatttgataaaaaagtttagttatcatcatatcctataaatgtgtgaattcatctca |
381 |
Q |
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| T |
30543565 |
catgtgattgcttcattttgaggttggttcatttgataaaaaaatttggttatcatcataccctataaatgtgtgaattcagctca |
30543480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 29879133 - 29879067
Alignment:
| Q |
135 |
ttaaaactcttaaa-atagtttgtcgtctatttgagctccacaaaatttgatggattaatttccgca |
200 |
Q |
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| T |
29879133 |
ttaaaactcttaaagagagtttgtcgtctatttgagtcccacaaattttgagagattaattttcgca |
29879067 |
T |
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