View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_91 (Length: 386)
Name: NF1498_high_91
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_91 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 75 - 350
Target Start/End: Complemental strand, 7370662 - 7370387
Alignment:
| Q |
75 |
tttgaaactaccggagatgagatgcaaattgtggagggtaaactaaagtgtcaagttctggaggatagagtgaagtgtctccaaagttttcttcggagtt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7370662 |
tttgaaactaccggagatgagatgcaaattgtggagggtaaactaaagtgtcaagttctggaggatagagtgaagtgtctccaaagttttcttcggagtt |
7370563 |
T |
|
| Q |
175 |
atctcaagctagcaacatcttcatcctttcattaatggnnnnnnnnnnnncttctcttttgaaatgttgcaacttctagtttattttatcaacatcttat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7370562 |
atctcaagctagcaacatcttcatcctttcattgatcgttttttgtttttcttctcttttgaaatgttgcaacttctagtttattttatcaacatcttat |
7370463 |
T |
|
| Q |
275 |
atggtttcttctttttagcttcaatttcaaatgaatgaagagtcaaaattattgatagctttgtgatcttgatatt |
350 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7370462 |
atgatttcttctttttagcttcaatttcaaatgaatgaagagtcaaaattattgatagctttgagatcttgatatt |
7370387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 7322863 - 7322775
Alignment:
| Q |
228 |
ctcttttgaaatgttgcaacttctagtttattttatcaacatcttatatggtttcttctttttagcttcaatttcaaatgaatgaagagt |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || || | | |||| ||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
7322863 |
ctcttttgaaatgttggaacttctagtttacttgattatcgtcttgtatggttgcttcttttt-gcttcaatttaaaatgaatgaagagt |
7322775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 7291285 - 7291202
Alignment:
| Q |
231 |
ttttgaaatgttgcaacttctagtttattttat--caacatcttatatggtttcttctttttagcttcaatttcaaatgaatgaa |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||| || | ||||||||||| | |||||||||| ||||||||| ||||||||||| |
|
|
| T |
7291285 |
ttttgaaatgttgcaacttctggtttatttgattatatcatcttatatgatcgcttcttttta-cttcaatttaaaatgaatgaa |
7291202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University