View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_92 (Length: 386)
Name: NF1498_high_92
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_92 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 61 - 370
Target Start/End: Complemental strand, 153551 - 153244
Alignment:
| Q |
61 |
tcttaccaaacgtcgctttttgctctttttcttcacgcgtacttcttcagcgtcatccaaaaccaaattaatgtactcttcaaagccctgtttnnnnnnn |
160 |
Q |
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| T |
153551 |
tcttaccaaacgtc--tttttgctctttttcttcactcgtacttcttcagcgtcatccaaaaccaaattaatgtactcttcaaagccctgtttaaaaaaa |
153454 |
T |
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| Q |
161 |
taaaagaaatcacaagatccttaatcatctacgcatatatcaaaatttcatattttatgtcaatgatattattctaagaaataataactatgttgaactc |
260 |
Q |
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| T |
153453 |
taaaataaatcacaagatccttaatcatctacgcatatatcaaaatttcatattttatgtcaatgatattattctaagaaataataactatgttgaactc |
153354 |
T |
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| Q |
261 |
ccaagcttgaatgagaagttatcaggatgtttgaaattataggtcaattatagatcaattataaatataatcataatcaaaagaaagaatgtactaaaga |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
153353 |
ccaagcttgaatgagaagttatcaggatgtttgaaattataggtcaattatagatcaattataaatataatcataaacaaaagaaagaatgtactaaagc |
153254 |
T |
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| Q |
361 |
agaagaaatt |
370 |
Q |
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|||| ||||| |
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| T |
153253 |
agaaaaaatt |
153244 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 30884660 - 30884584
Alignment:
| Q |
77 |
tttttgctctttttcttcacgcgtacttcttcagcgtcatccaaaaccaaattaatgtactcttcaaagccctgttt |
153 |
Q |
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| T |
30884660 |
tttttgctcttcttcttgacgtttacttcttcagcatcgtccaaaaccaaattcatgtactcgtcaaaaccctgttt |
30884584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 44989739 - 44989634
Alignment:
| Q |
42 |
ataaaatttgagaaacttatcttaccaaacgtcgctttttgctctttttcttcacgcgtacttcttcagcgtcatccaaaaccaaattaatgtactcttc |
141 |
Q |
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||||| ||||||||| |||||||||| | ||| ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| ||||| || || |
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| T |
44989739 |
ataaactttgagaaatttatcttacctagtgtc--tttttgctcttcttcttgacgtttacttcttcagcatcatccaaaaccaaattcatgtattcatc |
44989642 |
T |
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| Q |
142 |
aaagccct |
149 |
Q |
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| T |
44989641 |
aaaaccct |
44989634 |
T |
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