View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_95 (Length: 378)
Name: NF1498_high_95
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_95 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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| [»] scaffold0548 (1 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 3217 - 3562
Alignment:
| Q |
17 |
agactgtatatgtttgacttcagaagttattaatgtgctgcacaaaaagacatttggtggaaatcttgcaataaaggttgacatggcaaaggcatttgac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217 |
agactgtatatgtttgacttcagaagttattaatgtgctgcacaaaaagacatttggtggaaatcttgcaataaaggttgacatggcaaaggcatttgac |
3316 |
T |
|
| Q |
117 |
actttgaattgggattttctgcttaaagttttgaacacatttggttttagtgataagttctgcagttggatcaaaactattttgaactctgctaagatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3317 |
actttgaattgggattttctgcttaaagttttgaacacgtttggttttagtgataagttctgcagttggatcaaaactatcttgaactctgctaagatgt |
3416 |
T |
|
| Q |
217 |
ctatttcaatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgagga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417 |
ctatttcaatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgagga |
3516 |
T |
|
| Q |
317 |
agttttgagtagaagtcttactaagctggtcagagatggtagttta |
362 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3517 |
agttttgagtagaagccttactaagctggtcagagatggtagttta |
3562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 32006 - 31675
Alignment:
| Q |
17 |
agactgtatatgtttgacttcagaagttattaatgtgctgcacaaaaagacatttggtggaaatcttgcaataaaggttgacatggcaaaggcatttgac |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32006 |
agactgtatatgtttgacatcagaagttattaatgtgatgcacaaaaagacatttggtggaaatattgcaataaaggttgacatggcaaaggcatttgac |
31907 |
T |
|
| Q |
117 |
actttgaattgggattttctgcttaaagttttgaacacatttggttttagtgataagttctgcagttggatcaaaactattttgaactctgctaagatgt |
216 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31906 |
actttgaattgggattttctccttaaagttttcaagacatttggtttcagtgataagttctgcagttggatcaaaacaattttgaactctgctaagatgt |
31807 |
T |
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| Q |
217 |
ctatttcaatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgagga |
316 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||| |||||| |||| |
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| T |
31806 |
ctatttcaatcaatggtaagcttcagtgtttcttttcatgttcaag--------------gggatcctttatccccactgttgttttgccttgctaagga |
31721 |
T |
|
| Q |
317 |
agttttgagtagaagtcttactaagctggtcagagatggtagttta |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31720 |
agttttgagtagaagtcttactaagctggtcagagatggtagttta |
31675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 362
Target Start/End: Complemental strand, 1137 - 799
Alignment:
| Q |
24 |
atatgtttgacttcagaagttattaatgtgctgcacaaaaagacatttggtggaaatcttgcaataaaggttgacatggcaaaggcatttgacactttga |
123 |
Q |
| |
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|||||||| || || |||||| ||||||| |||| || ||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
1137 |
atatgtttaacatctgaagttgttaatgtattgcataagaagacttttggaggaaatgctgctataaaggttgatatggcaaaggcttttgacactttga |
1038 |
T |
|
| Q |
124 |
attgggattttctgcttaaagttttgaacacatttggttttagtgataagttctgcagttggatcaaaactattttgaactctgctaagatgtctatttc |
223 |
Q |
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||||||| || ||||| ||||||||||| || |||||||| |||||| || || | ||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
1037 |
attgggaattcctgctcaaagttttgaaaacttttggtttcagtgatcttttttgtaactggatcaaaacaattttaaactctgcaaagatgtctatttc |
938 |
T |
|
| Q |
224 |
aatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgaggaagttttg |
323 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | | ||||||||||| |||||||||||| |
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| T |
937 |
aatcaatggaaagcttcatggtttcttttcttgttcaaggggagtaagacaaggggaccctttgtcccctcttcttttttgtcttgcagaggaagttttg |
838 |
T |
|
| Q |
324 |
agtagaagtcttactaagctggtcagagatggtagttta |
362 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
837 |
agtagaagtctcactaagctggttagagatggtcgttta |
799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 355
Target Start/End: Complemental strand, 15089248 - 15088917
Alignment:
| Q |
24 |
atatgtttgacttcagaagttattaatgtgctgcacaaaaagacatttggtggaaatcttgcaataaaggttgacatggcaaaggcatttgacactttga |
123 |
Q |
| |
|
|||||||| || || |||||| ||||||| |||| || ||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
15089248 |
atatgtttaacatctgaagttgttaatgtattgcataagaagacttttggaggaaatgctgctataaaggttgatatggcaaaggcttttgacactttga |
15089149 |
T |
|
| Q |
124 |
attgggattttctgcttaaagttttgaacacatttggttttagtgataagttctgcagttggatcaaaactattttgaactctgctaagatgtctatttc |
223 |
Q |
| |
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||||||| || ||||| ||||||||||| || |||||||| |||||| || || | ||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
15089148 |
attgggaattcctgctcaaagttttgaaaacttttggtttcagtgatcttttttgtaactggatcaaaacaattttaaactctgcaaagatgtctatttc |
15089049 |
T |
|
| Q |
224 |
aatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgaggaagttttg |
323 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | | ||||||||||| |||||||||||| |
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| T |
15089048 |
aatcaatggaaagcttcatggtttcttttcttgttcaaggggagtaagacaaggggaccctttgtcccctcttcttttttgtcttgcagaggaagttttg |
15088949 |
T |
|
| Q |
324 |
agtagaagtcttactaagctggtcagagatgg |
355 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |
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|
| T |
15088948 |
agtagaagtctcactaagctggttagagatgg |
15088917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 183 - 355
Target Start/End: Complemental strand, 19133175 - 19133003
Alignment:
| Q |
183 |
tggatcaaaactattttgaactctgctaagatgtctatttcaatcaatggtaagcttcatggtttcttttcttgttcaaggggagtcagacaaggggatc |
282 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
19133175 |
tggatcaaaacaattttaaactctgcaaagatgtctatttcaatcaatggaaagcttcatggtttcttttcttgttcaaggggagtaagacaaggggacc |
19133076 |
T |
|
| Q |
283 |
ctttatcccctttgttgttttgtcttgctgaggaagttttgagtagaagtcttactaagctggtcagagatgg |
355 |
Q |
| |
|
|||| |||||| | | ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
19133075 |
ctttgtcccctcttcttttttgtcttgcagaggaagttttgagtagaagtctcactaagctggttagagatgg |
19133003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 331
Target Start/End: Complemental strand, 30882755 - 30882665
Alignment:
| Q |
240 |
catggtttcttttcttgttcaaggggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgaggaagttttgagtagaag |
331 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||| |||||||| ||||| ||||| ||||| |
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|
| T |
30882755 |
catggttacttttcttgttcaaggggagtcaggcaaggggatcccttat-ccctttttttttttgccttgctgaagaagtattgagcagaag |
30882665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 20384126 - 20384173
Alignment:
| Q |
71 |
tggtggaaatcttgcaataaaggttgacatggcaaaggcatttgacac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||| |||||||| |
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|
| T |
20384126 |
tggtggaaatcttgcaataaaggttgacatttccaaggcctttgacac |
20384173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 16474880 - 16474824
Alignment:
| Q |
264 |
ggagtcagacaaggggatcctttatcccctttgttgttttgtcttgctgaggaagtt |
320 |
Q |
| |
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||||| || |||||||||||||| |||||| | |||||||| |||||||||||||| |
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|
| T |
16474880 |
ggagtgaggcaaggggatcctttgtcccctcttttgttttgcattgctgaggaagtt |
16474824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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