View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_98 (Length: 376)
Name: NF1498_high_98
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 39378806 - 39379151
Alignment:
| Q |
12 |
caaaatcttgagttaatgacccattcaacaaattggaagacagatccaaaacttgtaaatttcgcaaatctttaggtagaaaaccagtgaagtaattgtt |
111 |
Q |
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| T |
39378806 |
caaaatcttgagttaatgacccgtttaacaaatttgaagacagatccaaaatttgtaaagttcgtaaatctttaggaagaaaaccagtgaagtaattgtt |
39378905 |
T |
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| Q |
112 |
cttaaacgaagctacggttaagttttgcatgtttgagagattgtttggtagttttccagtgaaagcattgtctgaaaagttaagaaactgaagatttcta |
211 |
Q |
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| T |
39378906 |
cttaaacgaagctacggttaagttttgcatgtttgagaggttgtttggtagttttccagtgaaagcattgtctgaaaagttaagaaactgaagatttcta |
39379005 |
T |
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| Q |
212 |
agctctgttaaagactctggaacttcacctgttaacaaattgttcgaaaaattaagaaaacgtagctcagaatttggctgaaaaaagtttgaagaaagag |
311 |
Q |
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| T |
39379006 |
agctctgttaaagactctggaacttcacctgttaacaaattgttcgaaaaattaagaaaacatagctcagaatttggctgaaaaaagtttgaagaaagag |
39379105 |
T |
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| Q |
312 |
acccattaatggaattattagaaagatcaagaatttgaaggtgttc |
357 |
Q |
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| T |
39379106 |
acccattaatggaattattagaaagatcaagaatttgaaggtgttc |
39379151 |
T |
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