View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_1 (Length: 946)
Name: NF1498_low_1
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 42325312 - 42324876
Alignment:
| Q |
21 |
cagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaatctctcacaa |
117 |
Q |
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| T |
42325312 |
cagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaatctctcacaa |
42325213 |
T |
|
| Q |
118 |
catcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaatatatacatatt |
217 |
Q |
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| T |
42325212 |
catcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaatatatacatatt |
42325113 |
T |
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| Q |
218 |
tggttggtgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatata |
317 |
Q |
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| T |
42325112 |
tggttggtgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatata |
42325013 |
T |
|
| Q |
318 |
gtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatg |
417 |
Q |
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| T |
42325012 |
gtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatg |
42324913 |
T |
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| Q |
418 |
ctacatttggtaggtattttaatggttgaaaaatgcc |
454 |
Q |
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| T |
42324912 |
ctacatttggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 42324848 - 42324804
Alignment:
| Q |
472 |
gatgagagagaatataatgacatattgaaattgtaaaacacacag |
516 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacag |
42324804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 649 - 791
Target Start/End: Complemental strand, 2100997 - 2100850
Alignment:
| Q |
649 |
acattcaatcattgaagactagaatgattgaatggtttgtatattgtatgctacaatttacaggatattagacattgaatatttttgtacgtaaatcaa- |
747 |
Q |
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| T |
2100997 |
acattcaatcattgaagacaacaatgattgaatcgtttgtatattgtatgctacaatttccagcatatcagacgttcaatatttttgtatgtaaaccaaa |
2100898 |
T |
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| Q |
748 |
---atatttttcgcacatgcaac-tgaaatattaattcatcgaaactt |
791 |
Q |
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| T |
2100897 |
tatatatttttcgtgcatgcaacatgaaatactaattcatcgagactt |
2100850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 532 - 652
Target Start/End: Complemental strand, 2101201 - 2101063
Alignment:
| Q |
532 |
tgtgtgataatgtgt--cattcatataaaatactacaaaggtgactgatgagcatagactatggtcagtatactg----------------acgtatcag |
613 |
Q |
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| T |
2101201 |
tgtgtgataatgtgtgtcattcatataagatactacaaaggtgactgatgagcatagactatggtcagtatactgtttacaacagtctacaacgtatcag |
2101102 |
T |
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| Q |
614 |
acattatattctaaagtatagactaatccttctacacat |
652 |
Q |
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| T |
2101101 |
acattatattctaaagtatagaccaatccttctacacat |
2101063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 39186818 - 39186883
Alignment:
| Q |
526 |
agaacctgtgtgataatgtgtcattcatataaaatactacaaaggtgactgatgagcatagactatg |
592 |
Q |
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| T |
39186818 |
agaacttgtgtgatactgtgtcattca-ataagatactgcaaaggtgactcatgagcatagactatg |
39186883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
245 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
294 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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