View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_10 (Length: 679)

Name: NF1498_low_10
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_10
NF1498_low_10
[»] chr2 (1 HSPs)
chr2 (1-663)||(8018149-8018814)


Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Original strand, 8018149 - 8018814
Alignment:
Q  1 ttcaaagaaagaatgaaaaagtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaagaaggttcaaaagtgagtg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018149 ttcaaagaaagaatgaaaaggtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaagaaggttcaaaagtgagtg 8018248  T
Q  101 agtggggactattgcagtaatagctgtatgtagag--agagggtcccactgatcgagcattaacaatgagcgtaactaccacatttacactcatcaaatg 198  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018249 agtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccacatttacactcatcaaatg 8018348  T
Q  199 cacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactatnnnnnnnngacatgtttgt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  8018349 cacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactataaaaaaaagacatgtttgt 8018448  T
Q  299 gcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatggtcagttttttggatatgt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018449 gcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatggtcagttttttggatatgt 8018548  T
Q  399 ttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaagaggtaggagta-nnnnnn 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  8018549 ttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaagaggtaggagtattttttt 8018648  T
Q  498 nggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttgtttgtttttgttgaaaga 597  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018649 tggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttgtttgtttttgttgaaaga 8018748  T
Q  598 atgactactactagtacatttttgttgcttaaagggttctatgtacaattaggtttacctatatac 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018749 atgactactactagtacatttttgttgcttaaagggttctatgtacaattaggtttacctatatac 8018814  T

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