View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_100 (Length: 376)
Name: NF1498_low_100
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 39000593 - 39000234
Alignment:
| Q |
1 |
tctattgaaagattgagtggaatgagtgataatgaagatagtggcaagtgggtcctccaacaccaatactatgagtggaggaaattatgcactaaatacg |
100 |
Q |
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| T |
39000593 |
tctattgaaagattgagtggaatgagtgataatgaagatagtggcaagtgggtcctccaacaccaatactatgagtggaggaaattatgcactaaatacg |
39000494 |
T |
|
| Q |
101 |
gaagctgcattatcaagcaaag-----caaaacaccaaagaaagaagtgtaaatagtaatttttgtgagtccttgtcatttagtccataaatatacgaaa |
195 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
39000493 |
gaagctgcattatcaagcaaagcaaagcaaaacacgaaagaaagaagtgtaaatagtaatttttgtgagttcttgtcatttagtccatgaatatacgaaa |
39000394 |
T |
|
| Q |
196 |
attacaaaaacatacatcaaaatttctcatttgttattcaatttggttctcgtatatatcttttatcgattagtttggttattagacgtatcttctttta |
295 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000393 |
attacaaaaacatacattgaaatttctcatttgttaatcaatttggttctcg--gatgtcttttatcgattagtttggttattagacgtatcttctttta |
39000296 |
T |
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| Q |
296 |
agttagtttgatgaataaaattactaataaaagatatattcagtaacattttagttattttg |
357 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
39000295 |
agttagtttgatgaataaaattactaacaaaagatatattcagtaatattttagttattttg |
39000234 |
T |
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